Job Description P0A9H3 Confidence 99.22% Date Thu Jan 5 11:10:12 GMT 2012 Rank 214 Aligned Residues 309 % Identity 14% Template c3oksB_ PDB info PDB header:transferase Chain: B: PDB Molecule:4-aminobutyrate transaminase; PDBTitle: crystal structure of 4-aminobutyrate transaminase from mycobacterium2 smegmatis Resolution 1.80 Å

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		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.			.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.				.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.																						.	.	.
Query SS confidence																									.	.																						.	.	.
Query Sequence		S	E	L	G	S	L	L	D	H	S	G	P	H	K	E	A	E	Q	Y	I	A	R	V	.	.	F	N	A	D	R	S	Y	M	V	T	N	G	T	S	T	A	N	K	I	V	G	.	.	.	M	Y	S	A	P	A	G	S	T	I	L	I	D	R	N	C	H	K	S	L	T	H	L	M	M	M	S	D	V	T	P
Query Conservation																									.	.																						.	.	.
Alig confidence																									.	.													.									.	.	.
Template Conservation																																							.
Template Sequence		H	T	C	F	M	V	T	P	Y	E	G	Y	V	A	V	C	E	Q	L	N	R	L	T	P	V	R	G	D	K	R	S	A	L	F	N	S	G	.	S	E	A	V	E	N	A	V	K	I	A	R	S	H	T	H	K	P	A	V	V	A	F	D	H	A	Y	H	G	R	T	N	L	T	M	A	L	T	A	K	V	M
Template Known Secondary structure				T	T	T	T	S																S	S			S	S							S	S		.																								T	T					S	S											T
Template Predicted Secondary structure																																							.
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.		.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		260	.																	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.			.	310	.	.	.	.					.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																.	.							.	.	.	.
Query SS confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																.	.							.	.	.	.
Query Sequence		I	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	R	P	T	R	N	A	Y	G	I	L	G	G	I	P	Q	S	E	F	Q	H	A	T	I	A	K	R	V	K	E	T	P	N	A	T	W	P	V	H	A	V	I	T	N	S	T	Y	.	.	D	G	L	L	Y	N	.	.	.	.	T	D	F
Query Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																.	.							.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.									.	.							.	.	.	.
Template Conservation																																																										.
Template Sequence		P	Y	K	D	G	F	G	P	F	A	P	E	I	Y	R	A	P	L	S	Y	P	F	R	D	A	E	F	G	K	E	L	A	T	D	G	E	L	A	A	K	R	A	I	T	V	I	D	K	Q	I	G	A	D	N	L	A	.	A	V	V	I	E	P	I	Q	G	E	G	G	F	I	V	P	A	D	G	F	L	P	T
Template Known Secondary structure		T	T	T	T	T			S			S	S													G	G	G						T																	T		G	G	G			.						S	S	B	T	T	T	T		B				T	T
Template Predicted Secondary structure																																																										.
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.		.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		318	.	320	.	.			.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
Predicted Secondary structure							.	.
Query SS confidence							.	.
Query Sequence		I	K	K	T	L	.	.	D	V	K	S	I	H	F	D	S	A	W	V	P	Y	T	N	F	S	P	I	Y	E	G	K	C	G	M	S	G	G	R	V	E	G	K	V	I	Y	E	T	Q	S	T	H	K	L	L	A	A	F	S	Q	A	S	M	I	H	V	K	G	D	V	N	E	E	T	F	N	E	A	Y	M	M
Query Conservation							.	.
Alig confidence							.	.																					.	.	.	.	.	.																	.	.													.	.	.
Template Conservation																													.	.	.	.	.	.																	.	.													.	.	.
Template Sequence		L	L	D	W	C	R	K	N	D	V	V	F	I	A	D	E	V	Q	T	G	F	A	R	T	G	A	M	.	.	.	.	.	.	F	A	C	E	H	E	G	I	D	P	D	L	I	V	T	A	.	.	G	I	A	G	G	L	P	L	S	A	V	T	.	.	.	G	R	A	E	I	M	D	S	P	H	V	S	G	L
Template Known Secondary structure									T	T								T	T	T	T	T	T	T	T	S	S	S	.	.	.	.	.	.	S	G	G	G	T	T	T				S						.	.		T	T	T	T	S	S						.	.	.							T		S		T	T	S	S
Template Predicted Secondary structure																													.	.	.	.	.	.																	.	.													.	.	.
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.							.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.			.	.	.	.	.	.	.	.	300	.	.	.				.	.	.	.	.	.	310	.	.	.	.	.	.	.
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	T	T	T	S	P	H	Y	G	I	V	A	S	T	E	T	A	A	A	M	M	K	G	N	A	G	K	R	L	I	N	G	S	I	E	R	A	I	K	F	R	K	E	I	K	R	L	R	T	E	S	D	G	W	F	F	D	V	W	Q	P	D	H	I	D	T	T	E	C	W	P	L	R	S	D	S	T	W	H	G
Query Conservation
Alig confidence																										.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	G	T	Y	G	G	N	P	I	A	C	A	A	A	L	A	T	I	E	T	I	E	S	E	.	.	.	G	L	V	A	R	A	Q	Q	I	E	K	I	M	K	D	R	L	G	R	L	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				S	S	S	S																		T	.	.	.	T																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																										.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.				.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
		476	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500															.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.			.	530	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.
Query Sequence		F	K	N	I	D	N	E	H	M	Y	L	D	P	I	K	V	T	L	L	T	P	G	M	E	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	G	T	M	S	D	F	G	I	P	A	S	I	V	A	K	Y	L	D	E	H	G	I	V	V	E	K	T	.	.	G	P	Y	N	L	L	F	L	F	S	I
Query Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.																	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	A	E	D	D	R	I	G	D	V	R	G	R	G	A	M	I	A	M	E	L	V	K	A	G	T	T	E	P	D	A	D	L	T	K	.	.	.	.	.	.	A	L	C	A	G	A	H	A	A	G	V	I	V	L	S	C	G	T	Y	G	N	V	V	R	F	L	P	P	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.				T	T								T	T							B	S	T	T	S			B							.	.	.	.	.	.									T	T								T	T	S									T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.
Template SS confidence
													364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.							.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.
		540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	D	K	T	K	A	L	S	L	L	R	A	L	T	D	F	K	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	I	G	D	D	L	L	N	E	G	L	D	V	L	E	E	V	L	R
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		427	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions