Job Description P0A9H3 Confidence 99.40% Date Thu Jan 5 11:10:12 GMT 2012 Rank 190 Aligned Residues 312 % Identity 13% Template c3nuiA_ PDB info PDB header:transferase Chain: A: PDB Molecule:pyruvate transaminase; PDBTitle: crystal structure of omega-transferase from vibrio fluvialis js17 Resolution 2.00 Å

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		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.			210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.									.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure																			.	.																							.	.	.	.	.	.	.	.
Query SS confidence																			.	.																							.	.	.	.	.	.	.	.
Query Sequence		H	S	G	P	H	K	E	A	E	Q	Y	I	A	R	V	F	N	.	.	A	D	R	S	Y	M	V	T	N	G	T	S	T	A	N	K	I	V	G	M	Y	S	.	.	.	.	.	.	.	.	A	P	A	G	S	T	I	L	I	D	R	N	C	H	K	S	L	T	H	L	M	M	M	S	D	V	T	P	I	Y	F
Query Conservation																			.	.																							.	.	.	.	.	.	.	.
Alig confidence																			.	.																							.	.	.	.	.	.	.	.																											.	.	.	.	.
Template Conservation																																																																													.	.	.	.	.
Template Sequence		M	S	D	Q	T	V	M	L	S	E	K	L	V	E	V	S	P	F	D	S	G	R	V	F	Y	T	N	S	G	S	E	A	N	D	T	M	V	K	M	L	W	F	L	H	A	A	E	G	K	P	Q	K	R	K	I	L	T	R	W	N	A	Y	H	G	V	T	A	V	S	A	S	M	T	G	K	.	.	.	.	.
Template Known Secondary structure																	S	S		S	S							S	S																			T	T		T	T								T	T					S	S							S			.	.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.																					.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.			.	310	.	.	.	.					.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.							.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.							.	.	.	.
Query Sequence		R	P	T	R	N	A	Y	G	I	L	G	G	I	P	Q	S	E	F	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	A	T	I	A	K	R	V	K	E	T	P	N	A	T	W	P	V	H	A	V	I	T	N	S	T	Y	.	.	D	G	L	L	Y	N	.	.	.	.	T	D
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.							.	.	.	.
Alig confidence		.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.											.	.							.	.	.	.
Template Conservation		.																																																						.	.
Template Sequence		.	P	Y	N	S	V	F	G	L	P	L	P	G	F	V	H	L	T	C	P	H	Y	W	R	Y	G	E	E	G	E	T	E	E	Q	F	V	A	R	L	A	R	E	L	E	E	T	I	Q	R	E	G	A	D	T	.	.	I	A	G	F	F	A	E	P	V	M	G	A	G	G	V	I	P	P	A	K	G	Y	F	Q
Template Known Secondary structure		.	G	G	G	G	G	G	T		S		T	T															T	T																							G	G	G	.	.								S	S	B	S	T	T	T	S	B				T	T
Template Predicted Secondary structure		.																																																						.	.
Template SS confidence
			164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.			.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		317	.	.	320	.	.			.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.		.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure								.	.																																																														.
Query SS confidence								.	.																																																														.
Query Sequence		F	I	K	K	T	L	.	.	D	V	K	S	I	H	F	D	S	A	W	V	P	Y	T	N	F	S	P	I	Y	E	G	K	C	G	M	S	G	G	R	V	E	G	K	V	I	Y	E	T	Q	S	T	H	K	L	L	A	A	F	S	Q	A	S	M	I	H	V	K	G	D	.	V	N	E	E	T	F	N	E	A	Y
Query Conservation								.	.																																																														.
Alig confidence								.	.																					.	.	.	.	.	.																																				.
Template Conservation																														.	.	.	.	.	.
Template Sequence		A	I	L	P	I	L	R	K	Y	D	I	P	V	I	S	D	E	V	I	C	G	F	G	R	T	G	N	T	.	.	.	.	.	.	W	G	C	V	T	Y	D	F	T	P	D	A	I	I	S	S	K	N	L	T	A	G	F	F	P	M	G	A	V	I	L	G	P	E	L	S	K	R	L	E	T	A	I	E	A	I
Template Known Secondary structure										T	T								T	T	T	T	T	T	T	T	S	S	S	.	.	.	.	.	.	S					T	T				S						G	G	G	G	T	T	S	S
Template Predicted Secondary structure																														.	.	.	.	.	.
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.							.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.										.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.	.	.
Query Sequence		M	M	H	T	T	T	S	P	H	Y	G	I	V	A	S	T	E	T	A	A	A	M	M	K	G	N	A	G	K	R	L	I	N	G	S	I	E	R	A	I	K	F	R	K	E	I	K	R	L	.	.	.	.	.	.	.	.	.	R	T	E	S	D	G	W	F	F	D	V	W	Q	P	D	H	I	D	T	T	E	C
Query Conservation																																																			.	.	.	.	.	.	.	.	.
Alig confidence																																																			.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.
Template Conservation																																																																										.	.	.	.	.	.	.	.
Template Sequence		E	E	F	P	H	G	F	T	A	S	G	H	P	V	G	C	A	I	A	L	K	A	I	D	V	V	M	N	E	G	L	A	E	N	V	R	R	L	A	P	R	F	E	E	R	L	K	H	I	A	E	R	P	N	I	G	E	Y	R	G	I	G	F	M	W	A	L	E	A	V	K	D	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	S			T	T																							S	S																				T	T	S	T	T								T	T								S	B	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																										.	.	.	.	.	.	.	.
Template SS confidence
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
		465	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	P	L	R	S	D	S	T	W	H	G	F	K	N	I	D	N	E	H	M	Y	L	D	P	I	K	V	T	L	L	T	P	G	M	E	K	D	G	T	M	S	D	F	G	I	P	A	S	I	V	A	K	Y	L	D	E	H	G	I	V	V	E	K	T	G	P	Y	N	L	L	F	L	F	S	I	G	I	D	K	T
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.																						.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.																						.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	A	S	K	T	P	F	.	.	.	.	.	.	.	.	.	.	.	D	G	N	L	S	V	S	E	R	I	A	N	T	C	T	D	L	G	L	I	C	.	R	P	L	G	Q	S	V	V	L	C	P	P	F	I	L	T	E	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T	T	B			.	.	.	.	.	.	.	.	.	.	.		G	G	G													T	T				.				T	T								T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.																						.
Template SS confidence
																								387	.	.	390	.	.	.												.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.		.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.
		545	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	L	S	L	L	R	A	L	T	D	F	K	R	A	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	M	D	E	M	F	D	K	L	E	K	A	L	D	K	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		433	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions