Job Description P0A9H3 Confidence 99.05% Date Thu Jan 5 11:10:12 GMT 2012 Rank 223 Aligned Residues 320 % Identity 10% Template c3if2B_ PDB info PDB header:transferase Chain: B: PDB Molecule:aminotransferase; PDBTitle: crystal structure of putative amino-acid aminotransferase2 (yp_265399.1) from psychrobacter arcticum 273-4 at 2.50 a resolution Resolution 2.50 Å

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		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.								210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.									.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.																					.
Query SS confidence																					.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.																					.
Query Sequence		L	D	H	S	G	P	H	K	E	A	E	Q	Y	I	A	R	V	F	N	.	.	.	.	.	.	.	A	D	R	S	Y	M	V	T	N	G	T	S	T	A	N	K	I	V	G	M	Y	S	A	P	A	.	.	.	.	.	.	.	.	G	S	T	I	L	I	D	R	N	C	H	K	S	L	T	H	L	M	M	M	.
Query Conservation																					.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.																					.
Alig confidence																					.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.																					.
Template Conservation
Template Sequence		Y	S	N	P	Q	G	D	S	A	F	I	D	A	L	V	G	F	F	N	R	H	Y	D	W	N	L	T	S	E	N	I	A	L	T	N	G	S	Q	N	A	F	F	Y	L	F	N	L	F	G	G	A	F	V	N	E	K	S	V	D	K	S	I	L	L	P	L	T	P	E	Y	I	G	Y	S	D	V	H	V	E	G
Template Known Secondary structure					T	T																							G	G	G					S	S													S																S	S	S	S			G	G	G	T	T			S	S	S
Template Predicted Secondary structure
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
							255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.		.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.						.
Predicted Secondary structure		.	.	.	.	.																																																					.																	.	.	.	.	.
Query SS confidence		.	.	.	.	.																																																					.																	.	.	.	.	.
Query Sequence		.	.	.	.	.	S	D	V	T	P	I	Y	F	R	P	T	R	N	A	Y	G	I	L	G	G	I	P	Q	S	E	F	Q	H	A	T	I	A	K	R	V	K	E	T	P	N	A	T	W	P	V	H	A	V	I	T	N	S	.	T	Y	D	G	L	L	Y	N	T	D	F	I	K	K	T	L	.	.	.	.	.	D
Query Conservation		.	.	.	.	.																																																					.																	.	.	.	.	.
Alig confidence		.	.	.	.	.																		.	.	.	.	.																.	.														.																	.	.	.	.	.
Template Conservation																								.	.	.	.	.																.	.
Template Sequence		Q	H	F	A	A	V	L	P	H	I	D	E	V	T	H	D	G	E	E	G	F	F	.	.	.	.	.	K	Y	R	V	D	F	E	A	L	E	N	L	P	A	L	.	.	K	E	G	R	I	G	A	I	C	C	S	R	P	T	N	P	T	G	N	V	L	T	D	E	E	X	A	H	L	A	E	I	A	K	R	Y
Template Known Secondary structure																	T	T						.	.	.	.	.											T					.	.		T	T									S	S		T	T	T																			T
Template Predicted Secondary structure																								.	.	.	.	.																.	.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.						.	.	.	190	.	.	.	.	.	.	.	.	.	200	.			.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	K	S	I	H	F	D	S	A	W	V	P	Y	T	N	F	S	P	I	Y	E	G	K	C	G	M	S	G	G	R	V	E	G	K	V	I	Y	E	T	Q	S	T	H	K	L	L	A	A	F	S	Q	A	S	M	I	H	V	K	G	D	V	N	E	E	T	F	N	E	A	Y	M	M	H	T	T	T	S	P	H	Y
Query Conservation
Alig confidence																					.	.	.	.	.	.																																					.
Template Conservation																					.	.	.	.	.	.																																					.
Template Sequence		D	I	P	L	I	I	D	N	A	Y	G	X	P	F	P	N	I	I	Y	.	.	.	.	.	.	S	D	A	H	L	N	W	D	N	N	T	I	L	C	F	S	L	S	K	I	G	L	P	G	X	R	T	G	I	I	V	A	D	A	K	V	.	I	E	A	V	S	A	X	N	A	V	V	N	L	A	P	T	R	F
Template Known Secondary structure		T								T	T		T	T	T	T			B		.	.	.	.	.	.	S								T	T							S	G	G	G	T		G	G	G												.												T	S	S
Template Predicted Secondary structure																					.	.	.	.	.	.																																					.
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.							.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.		.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		404	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	V	A	S	T	E	T	A	A	A	M	M	K	G	N	A	G	K	R	L	I	N	G	S	I	E	R	A	I	K	F	R	K	E	I	K	R	L	R	T	E	S	D	G	W	F	F	D	V	W	Q	P	D	H	I	D	T	T	E	C	W	P	L	R	S	D	S	T	W	H	G	F	K	N	I	D	N	E	H
Query Conservation
Alig confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.
Template Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.
Template Sequence		G	A	A	I	A	T	P	L	V	A	N	D	R	I	K	Q	L	S	D	N	E	I	K	P	F	Y	Q	K	Q	A	T	L	A	V	K	L	L	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	A	L	G	D	Y	P	L	X	I	H	K	P	E	G	A	I	F	.	.	.	.	.	.	.	.	.
Template Known Secondary structure												T	S									T																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S	S	S	S								B	S	S		.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.
Template SS confidence
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.																.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
		484	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.													.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	Y	L	D	P	I	K	V	T	L	L	T	P	G	M	E	K	D	G	T	M	S	D	F	G	I	P	A	S	I	V	A	K	Y	L	D	E	H	G	I	V	V	E	K	T	G	P	Y	N	L	.	.	.	.	.	.	.	.	.	.	.	.	L	F	L	F	S	I	G	I	D	K	T	K	A	L	S	L	L	R
Query Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	L	W	L	W	F	K	D	L	P	I	S	T	.	.	.	.	.	.	.	.	.	L	D	L	Y	E	R	L	K	A	K	G	T	L	I	V	P	S	E	Y	F	F	P	G	V	D	V	S	D	Y	Q	H	A	H	E	C	I	R	X	S	I	A	A	D	E	Q	T	L	I	D	G	I	K
Template Known Secondary structure		.	.	.	.	.	.	.						T	T		S	S			.	.	.	.	.	.	.	.	.										T	T						G	G	G	S		T	T	S			T	T		G	G	G	G	S						S		S
Template Predicted Secondary structure		.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.
Template SS confidence
									367	.	.	370	.	.	.	.	.	.	.	.										.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430
		552	.	.	.	.	.	.	.	560	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	T	D	F	K	R	A	F	D	L	N	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	I	G	E	V	V	R	E	L	Y	D	N	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		431	.	.	.	.	.	.	.	.	440	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions