Job Description P0A9H3 Confidence 99.53% Date Thu Jan 5 11:10:12 GMT 2012 Rank 155 Aligned Residues 349 % Identity 11% Template c3eibB_ PDB info PDB header:transferase Chain: B: PDB Molecule:ll-diaminopimelate aminotransferase; PDBTitle: crystal structure of k270n variant of ll-diaminopimelate2 aminotransferase from arabidopsis thaliana Resolution 1.85 Å

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		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.		.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure																																																											.
Query SS confidence																																																											.
Query Sequence		G	T	A	F	Q	K	S	P	V	G	S	L	F	Y	D	F	F	G	P	N	T	M	K	S	D	I	S	I	S	V	S	E	L	G	S	L	L	D	H	S	G	P	H	K	E	A	E	Q	Y	I	A	R	V	F	N	A	D	.	R	S	Y	M	V	T	N	G	T	S	T	A	N	K	I	V	G	M	Y	S	A	P
Query Conservation																																																											.
Alig confidence																																																											.															.
Template Conservation																																																																										.
Template Sequence		G	I	G	D	T	T	E	P	I	P	E	V	I	T	S	A	M	A	K	K	A	H	E	L	S	T	I	E	G	Y	S	G	Y	G	A	E	Q	G	A	K	P	L	R	A	A	I	A	K	T	F	Y	G	G	L	G	I	G	D	D	D	V	F	V	S	D	G	A	K	C	D	I	S	.	R	L	Q	V	M	F	G
Template Known Secondary structure		S	S					S																	T	T	S	T	T	T				S			T	T															T	T	T	T			G	G	G					S								.
Template Predicted Secondary structure																																																																										.
Template SS confidence
		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.		.	.	.	.	.	.	140
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.		.	.	.	310	.	.
Predicted Secondary structure																																																																											.
Query SS confidence																																																																											.
Query Sequence		A	G	S	T	I	L	I	D	R	N	C	H	K	S	L	T	H	L	M	M	M	S	D	V	T	P	I	Y	F	R	P	T	R	N	A	Y	G	I	L	G	G	I	P	Q	S	E	F	Q	H	A	T	I	A	K	R	V	K	E	T	P	N	A	T	W	P	V	H	A	V	I	T	N	S	.	T	Y	D	G	L	L
Query Conservation																																																																											.
Alig confidence																																										.	.	.																							.	.	.						.
Template Conservation																																										.	.	.																							.	.	.
Template Sequence		S	N	V	T	I	A	V	Q	D	P	S	Y	P	A	Y	V	D	S	S	V	I	M	G	Q	T	G	Q	F	N	T	D	V	Q	K	Y	G	N	I	E	Y	.	.	.	M	R	C	T	P	E	N	G	F	F	P	D	L	S	T	V	G	R	T	D	I	I	.	.	.	F	F	C	S	P	N	N	P	T	G	A	A
Template Known Secondary structure		T	T								S			T									T	T		S					T	T	T	T			T	T				.	.	.					T	T	T	T	T				G	G	G					S			.	.	.				S	S		T	T	T
Template Predicted Secondary structure																																										.	.	.																							.	.	.
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180				.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.				.	.	.	.	.	.	.	210	.	.	.	.
		313	.	.	.	.	.	.	320	.	.						.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.			.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.																																															.	.
Query SS confidence												.	.	.	.	.																																															.	.
Query Sequence		Y	N	T	D	F	I	K	K	T	L	.	.	.	.	.	D	V	K	S	I	H	F	D	S	A	W	V	P	Y	T	N	F	S	P	I	Y	E	G	K	C	G	M	S	G	G	R	V	E	G	K	V	I	Y	E	T	Q	S	T	H	K	L	.	.	L	A	A	F	S	Q	A	S	M	I	H	V	K	G	D	V	N
Query Conservation												.	.	.	.	.																																															.	.
Alig confidence												.	.	.	.	.													.								.	.	.																								.	.
Template Conservation																													.								.	.	.
Template Sequence		A	T	R	E	Q	L	T	Q	L	V	E	F	A	K	K	N	G	S	I	I	V	Y	D	S	A	Y	A	.	M	Y	M	S	D	D	N	.	.	.	P	R	S	I	F	E	I	P	G	A	E	E	V	A	M	E	T	A	S	F	S	N	Y	A	G	F	T	G	V	R	L	G	W	T	V	I	P	K	K	L	L	Y
Template Known Secondary structure																		T								T	T	G	.	G	G			S	S		.	.	.		S	S	G	G	G	S	T	T	G	G	G	T							S					S	T	T	T	T									T	T		B
Template Predicted Secondary structure																													.								.	.	.
Template SS confidence
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.		.	.	.	.	.	.	.				.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
		386							.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.
Query Sequence		E	.	.	.	.	.	.	E	T	F	N	E	A	Y	M	M	H	T	T	T	S	P	H	Y	G	I	V	A	S	T	E	T	A	A	A	M	M	K	G	N	A	G	K	R	L	I	N	G	S	I	E	R	A	I	K	F	R	K	E	I	K	R	L	R	T	E	S	D	G	W	F	F	D	V	W	Q	P	D	H	I
Query Conservation			.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.																																		.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																										.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	D	G	F	P	V	A	K	D	F	N	R	I	I	C	T	C	F	N	G	A	S	N	I	S	Q	A	G	A	L	A	C	L	T	P	E	G	L	E	A	.	M	H	K	V	I	G	F	Y	K	E	N	T	N	I	I	I	D	T	F	T	S	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	T	S		B																S												S	S							.																						T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																										.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330		.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
		460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.					.
Predicted Secondary structure																																																																													.	.	.	.
Query SS confidence																																																																													.	.	.	.
Query Sequence		D	T	T	E	C	W	P	L	R	S	D	S	T	W	H	G	F	K	N	I	D	N	E	H	M	Y	L	D	P	I	K	V	T	L	L	T	P	G	M	E	K	D	G	T	M	S	D	F	G	I	P	A	S	I	V	A	K	Y	L	D	E	H	G	I	V	V	E	K	T	G	P	Y	N	L	L	.	.	.	.	F
Query Conservation																																																																													.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.								.	.	.	.	.	.	.	.	.	.																												.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.								.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	Y	D	V	Y	G	G	K	N	A	P	Y	.	.	.	.	V	W	V	H	F	P	N	.	.	.	.	.	.	.	.	.	.	Q	S	S	W	D	V	F	A	E	I	L	E	K	T	H	V	V	T	T	P	G	S	G	F	G	P	G	G	E	G	F	V
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T							S	S	S	S		.	.	.	.						T	T	.	.	.	.	.	.	.	.	.	.	S																				G	G	G	G		G	G	G	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.								.	.	.	.	.	.	.	.	.	.
Template SS confidence
																	353	.	.	.	.	.	.	360	.	.	.	.					.	.	.	.	.	370	.											.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
		536	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	F	S	I	G	I	D	K	T	K	A	L	S	L	L	R	A	L	T	D	F	K	R	A	F	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	V	S	A	F	G	H	R	E	N	I	L	E	A	C	R	R	F	K	Q	L	Y	K	H	H	H
Template Known Secondary structure							S																	T	T	T
Template Predicted Secondary structure
Template SS confidence
		404	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions