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Job DescriptionP0A9H3
Confidence99.84%DateThu Jan 5 11:10:12 GMT 2012
Rank40Aligned Residues338
% Identity14%Templatec2po3B_
PDB info PDB header:transferaseChain: B: PDB Molecule:4-dehydrase; PDBTitle: crystal structure analysis of desi in the presence of its2 tdp-sugar product
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   153......160.........170.........180.........190.........200.........210.........220.........230..
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Query Sequence  MGGTAFQKSPVGSLFYDFFGPNTMKSDISISVSELGSLLDHSGPHKEAEQYIARVFNADRSYMVTNGTSTANKIVGMYSA
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Template Sequence  FGGPAAFDQPLLVGRPNRIDRARLYERL. DRALDSQWLSNGGPLVREFEERVAGLAGVRHA. VATCNATAGLQLLAHAA.
Template Known Secondary structure  GTS

S
SS
TT





.T

SSS
TSS.S
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   2011........2020.........2030........ .2040.........2050.........2060.........2070 .........2080.......
 
   233......240.........250.........260.........270.........280.........290.........300.........310..
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Query Sequence  PAGSTILIDRNCHKSLTHLMMMSDVTPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNSTYDGLL
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Template Sequence  GLTGEVIMPSMTFAATPHALRWIGLTPVFADIDPDTGNL. . . . . . . . . DPDQVAAA. . . . . VTPRTSAVVGVHLW. . GRP
Template Known Secondary structure  T

SSSS
TTT

B
TTTSSB.........
STT.....

TT
GG..G

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   2088.2090.........2100.........2110.........2120...... ...2130.... .....2140........ .2150.
 
   313......320... ......330.........340.........350.........360.........370.........380.........390
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Query Sequence  YNTDFIKKTLD. . VKSIHFDSAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNEETFN
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Template Sequence  CAADQLRKVADEHGLRLYFDAAHALGCAVDG. . . . . . . . RPAGSLGDAEVFSFHATKAVNAFEGGAVVTDDAD. . LAARI
Template Known Secondary structure 

T

TT
TT
TT........TTSSSSS

TTSSS

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   2152.......2160.........2170.........2180.. .......2190.........2200.........2210...... ...2220.
 
   391........400..... ....410.........420.........430.........440.........450.........460...
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Query Sequence  EAYMMHTTTSPHYGI. . . . . . . VASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTE
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Template Sequence  RALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLTSLDAFPEVIDRNRRNHAAYREHLADLPGVLVADHDRHGLN. . . . . . .
Template Known Secondary structure  TBTTTT
TT

TT


B
B

T
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TT

GGGGSB
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   2222.......2230.........2240.........2250.........2260.........2270.........2280.........2290....
 
   464.....470.........480.........490.........500.........510.........520.....
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Query Sequence  CWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLTPGMEKDGTMSDFGIPASIVAKYLDEHGIVV. . . . . . . . . . . . . . . . . .
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . NHQYVIVEI. . . . . . . DEATTGIHRDLVMEVLKAEGVHTRAYFSPGCHELEPYRGQP
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GGGSTTTTTS
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   2295....2300... ......2310.........2320.........2330.........2340....
 
   526...530.........540.........550......
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Query Sequence  . . . . . . . EKTGPYNLLFLFSIGIDKTKALSLLRALTDF
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Template Sequence  HAPLPHTERLAARVLSLPTGTAIGDDDIRRVADLLRLC
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TT

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   2345....2350.........2360.........2370.........2380..
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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