 |
Job Description | P0ADN0 | Confidence | 30.38% | Date | Thu Jan 5 11:21:24 GMT 2012 |
Rank | 50 | Aligned Residues | 110 |
% Identity | 12% | Template | d1ccwa_ |
SCOP info | Flavodoxin-like
| Cobalamin (vitamin B12)-binding domain
| Cobalamin (vitamin B12)-binding domain
|
Resolution | 1.60 |
|
 |
  |   |
293 | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . |
Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Y | R | L | H | G | E | S | W | R | E | K | V | I | E | R | P | V | V | H | K | D | Y | D | E | Q | P | R | G | P | F | I | V | C | V | D | T | S | G | S | M | G | G | F | N | E | Q | C | A | K | A | F | C | L | A | L | M | R | I | A | L | A | E | N | R | R | C | Y | I | M | L | F | S | T | E | I | V | R | Y | E | L |
Query Conservation |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |
|   |
|
|   |   |
|
|
|   |
|
|
|
|
|   |   |
|
|   |
|   |
|   |   |   |
|
|   |
|
|
|   |   |   |   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |
|   |   |
|   |   |
|
|   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |
| . | . |
|   |   |   |   |   |   |   |   |   | . | . | . | . | . |   |   |   |
|
|   |   |
|
|   |   |   |   |   |   |   |   |
|   |
|
|
|   |   |   |   |   |   |   |
Template Sequence |   |
F | T | N | A | G | F | N | V | V | N | I | G | V | L | S | P | Q | E | L | F | I | K | A | A | I | E | T | K | A | D | A | I | L | V | . |
. |
S | S | L | Y | G | Q | G | E | I | D | . |
. |
. |
. |
. |
C | K | G | L | R | Q | K | C | D | E | A | G | L | E | G | I | L | L | Y | V | G | G | N | I | V | V | G | K | Q |
Template Known Secondary structure |   |
 |  |  | T | T |
|  |  |  |  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  | T |
| S |  |  |  |  | . | . |  |  |
| S | S | T |  |  |  |  | . | . | . | . | . |  | T | T |  |  |  |  |  |  |  | T | T |
| T | T |
|  |  |  |  |  |  | S |
| S | S | S | S |
|
Template Predicted Secondary structure |   |
 |  |  |
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  | . | . |  |
|
|
|
|
|
|  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
27 | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | |
|
. | . | . | . | . | . | . | . | . | 70 | |
|
|
|
|
. | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . |
  |
  |   |
373 | . | . | . | . | . | . | 380 | . | . | . | . | . | |
. | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |  |  | . |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
S | G | P | Q | G | I | E | Q | A | I | R | F | L | . |
S | Q | Q | F | R | G | G | T | D | L | A | S | C | F | R | A | I | M | E | R | L | Q | S | R |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |
|
| . |   |   |   |   |   |
|
|
|
|
|   |   |
|
|   |   |
|
|   |   |
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |
|   |   |   |
|   |
|   |
|
|   |   |
|   |   |   |
|   |   |   |   |   |
|
|   |   |
|   |   |   |
Template Sequence |   |
H | W | P | D | V | E | K | R | F | K | D | M | G | Y | D | R | V | Y | A | P | G | T | P | P | E | V | G | I | A | D | L | K | K | D | L | N | I | E |
Template Known Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  | T | T |
| S |  |  |
|
| T | T |
|
|  |  |  |  |  |  |  |  |  |  |  |  | T |
|
|
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|