Job Description P0ADN0 Confidence 94.97% Date Thu Jan 5 11:21:24 GMT 2012 Rank 43 Aligned Residues 125 % Identity 21% Template c3k6sB_ PDB info PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-2; PDBTitle: structure of integrin alphaxbeta2 ectodomain Resolution 3.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.				.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.																													.	.	.	.	.	.
Predicted Secondary structure																							.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	F	I	V	C	V	D	T	S	G	S	M	G	G	F	N	E	Q	C	A	K	.	.	.	A	F	C	L	A	L	M	R	I	A	L	A	E	N	R	R	C	Y	I	M	L	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	E	I	V	R
Query Conservation																							.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.									.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.
Template Sequence		D	L	Y	Y	L	M	D	L	S	Y	S	M	L	D	D	L	R	N	V	K	K	L	G	G	D	L	L	R	A	L	N	E	.	.	I	T	E	S	G	R	I	G	F	G	S	F	V	D	K	T	V	L	P	F	V	N	T	H	P	D	K	L	R	N	P	C	P	N	K	E	K	E	C	Q	P	P	F	A	F	R
Template Known Secondary structure										S	S	T	T						T	T	T	T			T	T							S	.	.	S			S												S	S	T	T	S	S			S	S	T	T	T	T					S										S
Template Predicted Secondary structure																																		.	.
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.			.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.		.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.					.	.	.	410	.	.	.	.	.			.	.	.	.	420	.	.	.	.
Predicted Secondary structure																		.																						.	.	.	.										.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.																						.	.	.	.										.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	E	L	S	G	P	Q	G	I	E	Q	A	I	R	F	L	.	S	Q	Q	F	R	G	G	T	D	L	A	S	C	F	R	A	I	M	E	R	L	.	.	.	.	Q	S	R	E	W	F	D	A	D	.	.	A	V	V	I	S	D	F	I	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																		.																						.	.	.	.										.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.																						.	.	.	.										.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	V	L	K	L	T	N	N	S	N	Q	F	Q	T	E	V	G	K	Q	L	I	S	G	N	L	D	A	P	E	G	G	L	D	A	M	M	Q	V	A	A	C	P	E	E	I	G	W	R	N	V	T	R	L	L	V	F	A	T	D	D	G	F	H	F	A	G	D	G	K	L	G	A	I	L	T	P	N	D	G	R
Template Known Secondary structure								S		S									T	S						S	S	S	S											T	T									S	S									S	S					T	T	G	G	G	G	G	T							S
Template Predicted Secondary structure
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
																425	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	R	L	P	D	D	V	T	S	K	V	K	E	L	Q	R	V	H	Q	H	R	F	H	A	V
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.
Template Conservation																									.	.
Template Sequence		C	H	L	E	D	N	L	Y	K	R	S	N	E	F	D	Y	P	S	V	G	Q	L	A	.	.	H	K	L	A	E	N	N	I	Q	P	I	F	A	V
Template Known Secondary structure					S	S	S	B		S	S	G	G	G	S					G	G	G			.	.						T	T		B
Template Predicted Secondary structure																									.	.
Template SS confidence
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.			.	.	.	290	.	.	.	.	.	.	.	.	.	300

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions