Job Description P0ADN0 Confidence 96.04% Date Thu Jan 5 11:21:24 GMT 2012 Rank 39 Aligned Residues 108 % Identity 19% Template c3egxB_ PDB info PDB header:protein transport Chain: B: PDB Molecule:protein transport protein sec24a; PDBTitle: crystal structure of the mammalian copii-coat protein2 sec23a/24a complexed with the snare protein sec22b and3 bound to the transport signal sequence of the snare protein4 bet1 Resolution 3.30 Å

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		318	.	320	.		.	.	.	.	.	.	.	.	330	.	.			.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
Predicted Secondary structure						.												.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.												.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	R	G	P	.	F	I	V	C	V	D	T	S	G	S	M	.	.	G	G	F	N	E	Q	C	A	K	A	F	C	L	A	L	M	R	I	A	L	A	E	N	R	R	C	Y	I	M	L	F	S	T	E	I	V	R	Y	E	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation						.												.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.												.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	Q	P	P	V	Y	L	F	V	F	D	V	S	H	N	A	V	E	T	G	Y	L	N	S	V	C	Q	S	L	L	D	N	L	D	L	L	P	G	N	T	R	T	K	I	G	F	I	T	F	D	S	T	I	H	F	Y	G	L	Q	E	S	L	S	Q	P	Q	M	L	I	V	S	D	I	E	D	V	F	I	P	M
Template Known Secondary structure														S							T												T	S	T	T	S	S			S										S	S	S								T	T	S	S	S									T	T	S				S
Template Predicted Secondary structure
Template SS confidence
		501	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580
											373	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390					.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.																			.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.																			.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	S	G	P	Q	G	I	E	Q	A	I	R	F	L	S	Q	Q	F	R	.	.	.	.	G	G	T	D	L	A	S	C	F	R	A	I	M	E	R	L	Q	S	R	E	W	F	D	A	D	A	V	V	I	S	D	F	I	A	Q	R	L	P
Query Conservation		.	.	.	.	.	.	.	.	.																			.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																			.	.	.	.																					.	.	.
Template Conservation																																																					.	.	.
Template Sequence		P	E	N	L	L	V	N	L	N	E	S	K	E	L	V	Q	D	L	L	K	T	L	P	Q	M	F	T	K	T	L	E	T	Q	S	A	L	G	P	A	L	Q	A	A	F	K	L	M	S	P	T	G	.	.	.	G	R	M	S	V	F	Q	T	Q	L	P	T	L	G	V
Template Known Secondary structure		S	S	S	S																		G	G	G	T	T	T	T																				T	T	T		.	.	.									S				S	S	T
Template Predicted Secondary structure																																																					.	.	.
Template SS confidence
		581	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.				.	.	.	.	.	.	.	.	640	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions