Job Description P0ADN0 Confidence 95.23% Date Thu Jan 5 11:21:24 GMT 2012 Rank 41 Aligned Residues 114 % Identity 18% Template c3eg9B_ PDB info PDB header:protein transport Chain: B: PDB Molecule:sec24 related gene family, member d; PDBTitle: crystal structure of the mammalian copii-coat protein2 sec23/24 bound to the transport signal sequence of membrin Resolution 3.00 Å

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		308	.	310	.	.	.	.	.	.	.	.	.	320	.		.	.	.	.	.	.	.	.	330	.	.			.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350						.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure																.												.	.																			.	.	.	.	.																										.	.	.	.
Query SS confidence																.												.	.																			.	.	.	.	.																										.	.	.	.
Query Sequence		P	V	V	H	K	D	Y	D	E	Q	P	R	G	P	.	F	I	V	C	V	D	T	S	G	S	M	.	.	G	G	F	N	E	Q	C	A	K	A	F	C	L	A	L	M	R	I	.	.	.	.	.	A	L	A	E	N	R	R	C	Y	I	M	L	F	S	T	E	I	V	R	Y	E	L	S	G	P	.	.	.	.
Query Conservation																.												.	.																			.	.	.	.	.																										.	.	.	.
Alig confidence																.												.	.																			.	.	.	.	.																										.	.	.	.
Template Conservation
Template Sequence		T	L	D	Y	C	R	K	S	K	P	P	N	P	P	A	F	I	F	M	I	D	V	S	Y	S	N	I	K	N	G	L	V	K	L	I	C	E	E	L	K	T	M	L	E	K	I	P	K	E	E	Q	E	E	T	S	A	I	R	V	G	F	I	T	Y	N	K	V	L	H	F	F	N	V	K	S	N	L	A	Q	P
Template Known Secondary structure			G	G	G	S	G	G	G	S														S						T	T													G	G	G					T	T	S	S	S											S	S	S								T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		428	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.
																																	376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	G	I	E	Q	A	I	R	F	L	S	Q	Q	F	R	G	G	T	D	L	A	S	C	F	R	A	I	M	E	R	L	Q	S	R	E	W	F	D	A	D	A	V	V	I	S	D	F
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.
Template Conservation																																																																					.
Template Sequence		Q	M	M	V	V	T	D	V	G	E	V	F	V	P	L	L	D	G	F	L	V	N	Y	Q	E	S	Q	S	V	I	H	N	L	L	D	Q	I	P	D	M	F	A	D	S	N	E	N	E	T	V	F	A	P	V	I	Q	A	G	M	E	A	L	K	A	A	D	C	.	P	G	K	L	F	I	F	H	S	S
Template Known Secondary structure									T	T	S						S	S	S	S	S	B		T	T	T	T															T	T	T																							T	S	.										S
Template Predicted Secondary structure																																																																					.
Template SS confidence
		508	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.		.	.	.	.	.	580	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions