Job Description P0ADN0 Confidence 96.53% Date Thu Jan 5 11:21:24 GMT 2012 Rank 37 Aligned Residues 132 % Identity 10% Template c1pd0A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:protein transport protein sec24; PDBTitle: crystal structure of the copii coat subunit, sec24,2 complexed with a peptide from the snare protein sed53 (yeast syntaxin-5) Resolution 2.60 Å

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		322	.	.	.	.	.	.	.	330		.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.				.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
Predicted Secondary structure											.																								.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.																								.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	I	V	C	V	D	T	S	G	.	S	M	G	G	F	N	E	Q	C	A	K	A	F	C	L	A	L	M	R	I	A	L	A	.	.	.	E	N	R	R	C	Y	I	M	L	F	S	T	E	I	V	R	Y	E	L	S	G	P	Q	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation											.																								.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.																					.			.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.
Template Sequence		Y	C	F	L	I	D	V	S	Q	S	S	I	K	S	G	L	L	A	T	T	I	N	T	L	L	Q	N	L	D	S	.	I	P	N	H	D	E	R	T	R	I	S	I	L	C	V	D	N	A	I	H	Y	F	K	I	P	L	D	S	E	N	I	N	M	M	D	I	A	D	L	E	E	P	N	S	M	V	V	S	L
Template Known Secondary structure									S							T											T	T	T	T	T	.	S			T	T	S										S	S	S									G	G	G										T	T			T	T	T	S			T
Template Predicted Secondary structure																																.
Template SS confidence
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.		.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
												378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.						.	.	.	.	.	.	.	.	440	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																																																							.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.																																																							.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	I	E	Q	A	I	R	F	L	S	Q	Q	F	R	G	G	T	D	L	A	S	C	F	R	A	I	M	E	R	L	Q	S	R	E	W	F	D	A	D	A	V	V	I	S	D	F	I	A	Q	R	L	P	D	D	V	.	.	.	.	.	T	S	K	V	K	E	L	Q	R	V	H
Query Conservation		.	.	.	.	.	.	.	.	.	.																																																							.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																																		.	.	.																			.	.	.	.	.
Template Conservation																																													.	.	.
Template Sequence		K	A	C	R	Q	N	I	E	T	L	L	T	K	I	P	Q	I	F	Q	S	N	L	I	T	N	F	A	L	G	P	A	L	K	S	A	Y	H	L	I	G	G	V	G	.	.	.	G	K	I	I	V	V	S	G	T	L	P	N	L	G	I	G	K	L	Q	R	D	S	F	Y	K	N	F	T	I	D	C	S	K	V
Template Known Secondary structure		T	T	T															T	T	T																				T	T	T		.	.	.								S	S				S	S	T	T																T	T	T
Template Predicted Secondary structure																																													.	.	.
Template SS confidence
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.				440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.
		443	.	.	.	.	.	.	450	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	H	R	F	H	A	V	A	M	S	A	H	G	K	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	I	T	V	D	L	F	L	A	S	E	D	Y	M	D
Template Known Secondary structure		T										S	S
Template Predicted Secondary structure
Template SS confidence
		494	.	.	.	.	.	500	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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