Job Description P0ADN0 Confidence 99.11% Date Thu Jan 5 11:21:24 GMT 2012 Rank 19 Aligned Residues 139 % Identity 12% Template c1jeyB_ PDB info PDB header:dna binding protein/dna Chain: B: PDB Molecule:ku80; PDBTitle: crystal structure of the ku heterodimer bound to dna Resolution 2.50 Å

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		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.							.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.			.	.	.	.	.	.	.	360	.	.	.	.	.	.															.	.	.	370	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.																					.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.																					.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	R	G	P	F	I	V	C	V	D	T	S	G	S	M	.	.	.	.	.	.	G	G	F	N	E	Q	C	A	K	A	F	C	L	A	L	M	R	I	A	L	.	.	A	E	N	R	R	C	Y	I	M	L	F	S	T	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	V	R	Y	E	L	S	G	P
Query Conservation																	.	.	.	.	.	.																					.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.																					.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	K	A	A	V	V	L	C	M	D	V	G	F	T	M	S	N	S	I	P	G	I	E	S	P	F	E	Q	A	K	K	V	I	T	M	F	V	Q	R	Q	V	F	A	E	N	K	D	E	I	A	L	V	L	F	G	T	D	G	T	D	N	P	L	S	G	G	D	Q	Y	Q	N	I	T	V	H	R	H	L	M	L
Template Known Secondary structure														G	G	G	G			B	T	T	B																					T	T											S		S	S		B	S	T	T		T	T	T		S	T	T
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.			.	.	.	.	.	.	.	.	400	.	.	.	.	.	.					.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.																.	.	.	.
Query SS confidence																		.	.																.	.	.	.
Query Sequence		Q	G	I	E	Q	A	I	R	F	L	S	Q	Q	F	R	G	.	.	G	T	D	L	A	S	C	F	R	A	I	M	E	R	L	.	.	.	.	Q	S	R	E	W	F	D	A	D	A	V	V	I	S	D	F	I	A	Q	R	L	P	D	D	V	T	S	K	V	K	E	L	Q	R	V	H	Q	H	R	F	H	A	V
Query Conservation																		.	.																.	.	.	.
Alig confidence																		.	.																.	.	.	.																																			.
Template Conservation																																																																									.
Template Sequence		P	D	F	D	L	L	E	D	I	E	S	K	I	Q	P	G	S	Q	Q	A	D	F	L	D	A	L	I	V	S	M	D	V	I	Q	H	E	T	I	G	K	K	F	E	K	R	H	I	E	I	F	T	D	L	S	S	R	F	S	K	S	Q	L	D	I	I	I	H	S	L	K	K	.	C	D	I	S	L	Q	F	F
Template Known Secondary structure												T	T					S	S																			S	S	S	S			S												S					T	T											.	T	T
Template Predicted Secondary structure																																																																									.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.		.	.	.	160	.	.	.	.
		450	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	M	S	A	H	G	K	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	P	F	S	L	G	G	P
Template Known Secondary structure			S	S
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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