Job Description P0ADN0 Confidence 98.01% Date Thu Jan 5 11:21:24 GMT 2012 Rank 33 Aligned Residues 134 % Identity 13% Template c1jeqA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:ku70; PDBTitle: crystal structure of the ku heterodimer Resolution 2.70 Å

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		322	.	.	.	.	.	.	.	330	.	.								.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.			.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.											.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure													.	.	.	.	.	.	.																	.	.																		.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.																	.	.																		.	.	.	.	.	.	.	.	.	.
Query Sequence		F	I	V	C	V	D	T	S	G	S	M	.	.	.	.	.	.	.	G	G	F	N	E	Q	C	A	K	A	F	C	L	A	L	M	.	.	R	I	A	L	A	E	N	R	R	C	Y	I	M	L	F	S	T	.	.	.	.	.	.	.	.	.	.	E	I	V	R	Y	E	L	S	G	P	Q	G	I	E	Q	A	I
Query Conservation													.	.	.	.	.	.	.																	.	.																		.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.																	.	.																		.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	I	F	L	V	D	A	S	K	A	M	F	E	S	Q	S	E	D	E	L	T	P	F	D	M	S	I	Q	C	I	Q	S	V	Y	I	S	K	I	I	S	S	D	R	D	L	L	A	V	V	F	Y	G	T	E	K	D	K	N	S	V	N	F	K	N	I	Y	V	L	Q	E	L	D	N	P	G	A	K	R	I	L
Template Known Secondary structure									S	S	G	G	G	S			S	S	S	S																					T	T											S		S	S		B	S	T	T			S	S
Template Predicted Secondary structure
Template SS confidence
		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
		383	.	.	.	.														.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.			.	.	.	.	420	.	.	.	.	.	.	.	.	.	430						.	.	.	.	.	.	.	.	.	440	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.																.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.																.	.	.	.	.
Query Sequence		R	F	L	S	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	F	R	G	G	T	D	L	A	S	C	F	R	A	I	M	E	R	L	Q	S	R	E	W	F	D	A	D	.	.	A	V	V	I	S	D	F	I	A	Q	R	L	P	D	D	.	.	.	.	.	V	T	S	K	V	K	E	L	Q	R	V	H
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.																.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.																.	.	.	.	.											.
Template Conservation																																																																																.
Template Sequence		E	L	D	Q	F	K	G	Q	Q	G	Q	K	R	F	Q	D	M	M	G	H	G	S	D	Y	S	L	S	E	V	L	W	V	C	A	N	L	F	S	D	V	Q	F	K	M	S	H	K	R	I	M	L	F	T	N	E	D	N	P	H	G	N	D	S	A	K	A	S	R	A	R	T	K	A	G	D	L	R	D	.	T
Template Known Secondary structure					T	T	S												T		S																			T			S			S									S		S		T	T	S	S		T	T															.
Template Predicted Secondary structure																																																																																.
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.		.
		443	.	.	.	.	.	.	450	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	H	R	F	H	A	V	A	M	S	A	H	G	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	I	F	L	D	L	M	H	L	K	K	P	G	G
Template Known Secondary structure		T								B			T	T
Template Predicted Secondary structure
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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