Job Description P75967 Confidence 94.85% Date Thu Jan 5 12:16:34 GMT 2012 Rank 114 Aligned Residues 156 % Identity 9% Template c3mq2A_ PDB info PDB header:transferase Chain: A: PDB Molecule:16s rrna methyltransferase; PDBTitle: crystal structure of 16s rrna methyltranferase kamb Resolution 1.69 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.			.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure																																								.	.
Query SS confidence																																								.	.
Query Sequence		M	P	S	R	Y	L	C	E	Y	I	R	S	I	E	K	N	G	H	A	L	D	F	G	C	G	K	L	R	Y	S	D	E	L	I	S	K	F	D	.	.	E	V	T	F	L	D	S	K	R	Q	L	E	R	E	Q	I	I	R	G	I	K	T	K	I	I	D	Y	V	P	R	Y	Y	K	N	A	N	T	V	A	F
Query Conservation																																								.	.
Alig confidence														.	.																									.	.											.	.	.	.	.																.	.
Template Conservation														.	.																																					.	.	.	.	.																.	.
Template Sequence		F	S	D	A	E	F	E	Q	L	R	S	Q	.	.	Y	D	D	V	V	L	D	V	G	T	G	D	G	K	H	P	Y	K	V	A	R	Q	N	P	S	R	L	V	V	A	L	D	A	D	K	S	.	.	.	.	.	R	M	E	K	I	S	A	K	A	A	A	K	P	A	K	.	.	G	G	L	P	N	L	L	Y
Template Known Secondary structure												T	T	.	.	S	S							S		T	T												T	T								S		G	G	.	.	.	.	.	G	G								T	S		G	G	G	.	.	T			T	T
Template Predicted Secondary structure														.	.																																					.	.	.	.	.																.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.			.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.						60	.	.	.	.	.	.	.	.	.	70	.	.	.	.			.	.	.	.	.	80	.	.
		103	.	.	.	.	.	.								110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.
Query Sequence		E	D	V	D	K	I	I	.	.	.	.	.	.	.	G	G	Y	D	F	I	L	C	S	N	V	L	S	A	V	P	C	R	D	T	I	D	K	I	V	L	S	I	K	R	L	L	K	S	G	G	E	T	L	I	V	N	Q	Y	K	S	S	Y	F	K	K	Y	E	T	G	R	K	H	L	Y	G	Y	I	Y	K	N
Query Conservation									.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.																						.																						.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																					.																						.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	W	A	T	A	E	R	L	P	P	L	S	G	V	G	E	L	H	V	L	M	P	W	G	S	L	L	R	G	V	L	G	S	S	P	.	E	M	L	R	G	M	A	A	V	C	R	P	G	A	S	F	L	V	A	L	N	.	.	.	.	.	.	.	.	.	.	.	.	L	H	A	W	R	P	S	V	P	E	V
Template Known Secondary structure						S	T	T			S											S											T	S	S	S	.									T													.	.	.	.	.	.	.	.	.	.	.	.	G	G	G	B	T	T	B		G	G	G
Template Predicted Secondary structure																																					.																						.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.		.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.													.	140	.	.	.	.	.	.	.	.	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	K	S	V	S	Y	Y	G	L	L	D	E	L	A	V	Q	E	I	C	S	S	H	G	L	E	I	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	E	H	P	E	P	T	P	D	S	A	D	E	W	L	A	P	R	Y	A	E	A	G	W	K	L	A
Template Known Secondary structure		T	T																				T	T
Template Predicted Secondary structure
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions