Job Description P75967 Confidence 53.11% Date Thu Jan 5 12:16:34 GMT 2012 Rank 176 Aligned Residues 99 % Identity 21% Template c2cmgA_ PDB info PDB header:transferase Chain: A: PDB Molecule:spermidine synthase; PDBTitle: crystal structure of spermidine synthase from helicobacter2 pylori Resolution 2.0 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110					.	.	.	.	.	.
Predicted Secondary structure																																																																								.	.	.	.
Query SS confidence																																																																								.	.	.	.
Query Sequence		G	H	A	L	D	F	G	C	G	K	L	R	Y	S	D	E	L	I	S	K	F	D	E	V	T	F	L	D	S	K	R	Q	L	E	R	E	Q	I	I	R	G	I	K	T	K	I	I	D	Y	V	P	R	Y	Y	K	N	A	N	T	V	A	F	E	D	V	D	K	I	I	G	.	.	.	.	G	Y	D	F	I	L
Query Conservation																																																																								.	.	.	.
Alig confidence																														.	.	.	.	.	.	.	.	.																																		.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.
Template Sequence		K	E	V	L	I	V	D	G	F	D	L	E	L	A	H	Q	L	F	K	Y	D	T	H	I	D	F	V	Q	.	.	.	.	.	.	.	.	.	A	D	E	K	I	L	D	S	F	I	S	F	F	P	H	F	H	E	V	K	N	N	K	N	F	T	H	A	K	Q	L	L	D	L	D	I	K	K	Y	D	L	I	F
Template Known Secondary structure								S	S										T	T	S	S								.	.	.	.	.	.	.	.	.	S						G	G	G	T	T	T	S	T	T						T		T	T					S	S	G	G	G	S
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.										.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	S	N	V	L	S	A	V	P	C	R	D	T	I	D	K	I	V	L	S	I	K	R	L	L	K	S	G	G	E	T	L	I	V	N	Q	Y	K	S	S	Y	F
Query Conservation
Alig confidence			.	.	.	.	.	.	.	.																					.	.
Template Conservation			.	.	.	.	.	.	.	.																					.	.
Template Sequence		C	.	.	.	.	.	.	.	.	L	Q	E	P	D	I	H	R	I	D	G	L	K	R	M	L	K	E	D	G	.	.	V	F	I	S	V	A	K	H	P	L	L
Template Known Secondary structure			.	.	.	.	.	.	.	.	S	S												T	T						.	.									T	T	T
Template Predicted Secondary structure			.	.	.	.	.	.	.	.																					.	.
Template SS confidence
		145									.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.			.	.	.	.	170	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions