Job Description Q46864 Confidence 75.68% Date Thu Jan 5 12:35:21 GMT 2012 Rank 169 Aligned Residues 57 % Identity 12% Template c1l9uH_ PDB info PDB header:transcription Chain: H: PDB Molecule:sigma factor siga; PDBTitle: thermus aquaticus rna polymerase holoenzyme at 4 a2 resolution Resolution 4.00 Å

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		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.							.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.
Query Sequence		N	K	E	E	S	D	A	F	M	A	Q	V	K	A	F	R	A	S	V	N	A	E	T	V	A	P	E	F	I	V	K	V	R	K	K	L	S	.	.	.	.	.	.	L	T	Q	K	E	A	S	E	I	F	G	G	G	V	N	A	F	S	R	Y	E	K
Query Conservation																																							.	.	.	.	.	.
Alig confidence																						.	.																.	.	.	.	.	.
Template Conservation																						.	.
Template Sequence		S	P	V	E	A	A	A	Q	S	L	L	S	E	E	L	E	K	A	L	S	.	.	K	L	S	E	R	E	A	M	V	L	K	L	R	K	G	L	I	D	G	R	E	H	T	L	E	E	V	G	A	Y	F	G	V	T	R	E	R	I	R	Q	I	E	N
Template Known Secondary structure			T	T																T	T	.	.	S	S		T	T	T	T					T	T	S	S	T	T	S	S										T	T	S		S
Template Predicted Secondary structure																						.	.
Template SS confidence
		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.			.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions