Job Description P04036 Confidence 97.56% Date Thu Jan 5 10:58:10 GMT 2012 Rank 276 Aligned Residues 130 % Identity 18% Template c7mdhA_ PDB info PDB header:chloroplastic malate dehydrogenase Chain: A: PDB Molecule:protein (malate dehydrogenase); PDBTitle: structural basis for light acitvation of a chloroplast enzyme. the2 structure of sorghum nadp-malate dehydrogenase in its oxidized form Resolution 2.40 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.						.	.	.	.	.	.	.	40	.	.	.	.	.	.	.					.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																																	.	.	.	.	.																.	.	.	.
Query SS confidence																																	.	.	.	.	.																.	.	.	.
Query Sequence		H	D	A	N	I	R	V	A	I	A	G	A	G	G	R	M	G	R	Q	L	I	Q	A	A	L	A	L	E	G	V	Q	.	.	.	.	.	L	G	A	A	L	E	R	E	G	S	S	L	L	G	S	.	.	.	.	D	A	G	E	L	A	G	A	G	K	T	G	V	T	V	Q	S	S	L	D	A	V	K	D	D
Query Conservation																																	.	.	.	.	.																.	.	.	.
Alig confidence																																	.	.	.	.	.																.	.	.	.
Template Conservation
Template Sequence		W	K	K	L	V	N	I	A	V	S	G	A	A	G	M	I	S	N	H	L	L	F	K	L	A	S	G	E	V	F	G	Q	D	Q	P	I	A	L	K	L	L	G	S	E	R	S	F	Q	A	L	E	G	V	A	M	E	L	E	D	S	L	Y	P	L	L	R	E	V	S	I	G	I	D	P	Y	E	V	F	E	D
Template Known Secondary structure												T	T	T	S													T	T	T	T		T	T											G	G	G													T	T	T		T	T								S						T	T	T
Template Predicted Secondary structure
Template SS confidence
		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
		73	.	.	.	.	.	.										80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.		.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.																																								.
Query SS confidence									.	.	.	.	.	.	.	.	.																																								.
Query Sequence		F	D	V	F	I	D	F	.	.	.	.	.	.	.	.	.	T	R	P	E	G	T	L	N	H	L	A	F	C	R	Q	H	G	K	G	M	V	I	G	T	T	G	F	D	E	A	G	K	Q	A	I	R	D	A	A	.	A	D	I	A	I	V	F	A	A	N	F	S	V	G	V	N	V	M	L	K	L	L	E	K
Query Conservation									.	.	.	.	.	.	.	.	.																																								.
Alig confidence									.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.												.	.	.
Template Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.
Template Sequence		V	D	W	A	L	L	I	G	A	K	P	R	G	P	G	M	E	R	A	A	L	L	D	I	N	G	Q	I	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	D	Q	G	K	A	L	N	A	V	A	S	K	N	V	K	V	L	V	V	G	N	P	.	.	.	C	N	T	N	A	L	I	C	L	K
Template Known Secondary structure			S												T	T															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											S		T	T							S	S	S	.	.	.
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.
Template SS confidence
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.																.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.				.	.	.	.	.	180	.	.	.	.
		143	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	K	V	M	G	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	A	P	D	I	P	A
Template Known Secondary structure		T		T	T	S		G
Template Predicted Secondary structure
Template SS confidence
		185	.	.	.	.	190	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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