Job Description P04036 Confidence 95.77% Date Thu Jan 5 10:58:10 GMT 2012 Rank 467 Aligned Residues 197 % Identity 17% Template c3dl2A_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ubiquitin-conjugating enzyme e2 variant 3; PDBTitle: hexagonal structure of the ldh domain of human ubiquitin-2 conjugating enzyme e2-like isoform a Resolution 2.10 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.		.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																							.
Query SS confidence																																							.
Query Sequence		H	D	A	N	I	R	V	A	I	A	G	A	G	G	R	M	G	R	Q	L	I	Q	A	A	L	A	L	E	G	V	Q	L	G	A	A	L	E	.	R	E	G	S	S	L	L	G	S	D	A	G	E	L	A	G	A	G	K	T	G	V	T	V	Q	S	S	L	D	A	V	K	D	D	F	D	V	F	I	D	F	T
Query Conservation																																							.
Alig confidence														.																									.																													.	.	.	.
Template Conservation														.																																																						.	.	.	.
Template Sequence		K	S	T	V	N	K	I	T	V	V	G	G	.	G	E	L	G	I	A	C	T	L	A	I	S	A	K	G	I	A	D	R	L	V	L	L	D	L	S	E	G	T	K	G	A	T	M	D	L	E	I	F	N	L	P	N	V	E	I	S	K	D	L	S	A	S	.	.	.	.	A	H	S	K	V	V	I	F	T	V
Template Known Secondary structure														.	S														T			S								S		G	G	G		T	T							T		T	T					S		G	G	G	G	.	.	.	.	T	T		S
Template Predicted Secondary structure														.																																																						.	.	.	.
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.		.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.					.	.	.	240	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		R	P	E	G	T	L	N	H	L	A	F	C	R	Q	H	G	K	G	M	V	I	G	T	T	G	F	D	E	A	G	K	Q	A	I	R	D	A	A	A	D	I	A	I	V	F	A	A	N	F	S	V	G	V	N	V	M	L	K	L	L	E	K	A	A	K	V	M	G	D	Y	T	D	I	E	I	I	E	A	H	H
Query Conservation
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.																							.	.	.																		.	.	.	.						.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.																							.	.	.																		.	.	.	.						.	.
Template Sequence		N	S	Q	S	Y	L	D	V	V	Q	S	N	V	D	M	F	.	.	.	.	.	.	.	.	.	.	.	R	A	L	V	P	A	L	G	H	Y	S	Q	H	S	V	L	L	V	A	S	Q	P	.	.	.	V	E	I	M	T	Y	V	T	W	K	L	S	T	F	P	A	N	.	.	.	.	R	V	I	G	I	.	.
Template Known Secondary structure																		.	.	.	.	.	.	.	.	.	.	.		T	T								S	T	T							S	S	S	.	.	.													T			G	G	.	.	.	.	G					.	.
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.																							.	.	.																		.	.	.	.						.	.
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.												270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.				.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.					.	310	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.				.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.
Query SS confidence																			.	.	.
Query Sequence		R	H	K	V	D	A	P	S	G	T	A	L	A	M	G	E	A	.	.	.	I	A	H	A	L	D	K	D	L	K	D	C	A	V	Y	S	R	E	G	H	T	G	E	R	V	P	G	T	I	G	F	A	T	V	R	A	G	D	I	V	G	E	H	T	A	M	F	A	D	I	G	E	R	L	E	I	T	H	K	A
Query Conservation																			.	.	.
Alig confidence		.	.	.	.	.	.	.	.										.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	G	C	N	L	D	S	Q	R	L	Q	Y	I	I	T	N	V	L	K	A	Q	T	S	G	K	E	V	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	I	G	E	Q	.	.	.	.	.	G	E	D	K	V	L	T	W	S	G	E	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	T	T													T	T	S						S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			B	S		.	.	.	.	.	S	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.
Template SS confidence
										318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.																								.	.	.	.	.						350	.	.	.	.	.	.	.	.	.	360	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	R	M	T	F	A	N	G	A	V	R	S	A	L	W	L	S	G	K	E	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	V	S	H	T	S	Q	V	Q	L	S	N	R	A	M	E	L	L	R	V	K	G
Template Known Secondary structure																					T
Template Predicted Secondary structure
Template SS confidence
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions