Job Description P04036 Confidence 99.77% Date Thu Jan 5 10:58:10 GMT 2012 Rank 13 Aligned Residues 248 % Identity 19% Template c3dapB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:diaminopimelic acid dehydrogenase; PDBTitle: c. glutamicum dap dehydrogenase in complex with nadp+ and2 the inhibitor 5s-isoxazoline Resolution 2.20 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	H	D	A	N	I	R	V	A	I	A	G	A	G	G	R	M	G	R	Q	L	I	Q	A	A	L	A	L	E	G	V	Q	L	G	A	A	L	E	R	E	G	S	S	L	L	G	S	D	A	G	E	L	A	G	A	G	K	T	G	V	T	V	Q	S	S	L	D	A	V	K	D	D	F	D	V	F	I	D	F	T
Query Conservation
Alig confidence				.	.										.																														.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.										.																														.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	T	.	.	N	I	R	V	A	I	V	G	Y	.	G	N	L	G	R	S	V	E	K	L	I	A	K	Q	P	D	M	D	L	V	G	I	F	S	R	R	A	T	L	.	.	.	.	.	.	.	.	.	.	.	D	T	K	T	P	V	F	D	V	A	D	V	D	K	H	A	D	D	V	D	V	L	F	L	C	M
Template Known Secondary structure				.	.										.	S											T	T		S	S									S		S			.	.	.	.	.	.	.	.	.	.	.	S	S	S	S					G	G	G	G	G	G	G	T	T	T		S						S
Template Predicted Secondary structure				.	.										.																														.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.			.	.	.	.	.	.	.	10	.		.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40												.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.			.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.			120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																							.	.																			.	.																																				.	.
Query SS confidence																							.	.																			.	.																																				.	.
Query Sequence		R	P	E	G	T	L	N	H	L	A	F	C	R	Q	H	G	K	G	M	V	I	.	.	G	T	T	G	F	D	E	A	G	K	Q	A	I	R	D	A	A	A	.	.	D	I	A	I	V	F	A	A	N	F	S	V	G	V	N	V	M	L	K	L	L	E	K	A	A	K	V	M	G	D	Y	T	D	I	E	.	.
Query Conservation																							.	.																			.	.																																				.	.
Alig confidence																							.	.																			.	.																																				.	.
Template Conservation
Template Sequence		G	S	A	T	D	I	P	E	Q	A	P	K	F	A	Q	F	A	C	T	V	D	T	Y	D	N	H	R	D	I	P	R	H	R	Q	V	M	N	E	A	A	T	A	A	G	N	V	A	L	V	S	T	G	W	D	P	G	M	F	S	I	N	R	V	Y	A	A	A	V	L	A	E	H	Q	Q	H	T	F	W	G	P
Template Known Secondary structure			T	T	T										T	T	T	S									G	G	G																T						S		S	B	T	T	B														S	S									S
Template Predicted Secondary structure
Template SS confidence
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		155	.	.	.	.	160																															.	.	.	.	.	.	.	.	.														170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	I	E	A	H	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	H	K	V	D	A	P	S	G	.	.	.	.	.	.	.	.	.	.	.	.	.	T	A	L	A	M	G	E	A	I	A	H	A	L	D	K	D	L	K	D	C	A	V
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	L	S	Q	G	H	S	D	A	L	R	R	I	P	G	V	Q	K	A	V	Q	Y	T	L	P	S	E	D	A	L	E	K	A	R	R	G	E	A	G	D	L	T	G	K	Q	T	H	K	R	Q	C	F	V	V	A	D	A	A	D	H	E	R	I	E	N	D	I	R	T	M	P	D	Y	F	V	G	Y	E	V	E
Template Known Secondary structure													T	S	T	T		S																		T	T			T	T																	G	G	G										T		T	T	T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.						.	.	260	.	.	.	.	.	.
Predicted Secondary structure																																																																				.	.	.	.	.
Query SS confidence																																																																				.	.	.	.	.
Query Sequence		Y	S	R	E	G	H	T	G	E	R	V	P	G	T	I	G	F	A	T	V	R	A	G	D	I	V	G	E	H	T	A	M	F	A	D	I	G	E	R	L	E	I	T	H	K	A	S	S	R	M	T	F	A	N	G	A	V	R	S	A	L	W	L	S	G	K	.	.	.	.	.	E	S	G	L	F	D	M	R	D
Query Conservation																																																																				.	.	.	.	.
Alig confidence																								.	.	.	.	.																																								.	.	.	.	.
Template Conservation																								.	.	.	.	.
Template Sequence		V	N	F	I	D	E	A	T	F	D	S	E	H	T	G	M	P	H	G	G	H	V	.	.	.	.	.	I	T	T	G	D	T	G	G	F	N	H	T	V	E	Y	I	L	K	L	D	R	N	P	D	F	T	A	S	S	Q	I	A	F	G	R	A	A	H	R	M	K	Q	Q	G	Q	S	G	A	F	T	V	L	E
Template Known Secondary structure														S										.	.	.	.	.						S	S	S												S																							T	T							G	G	G
Template Predicted Secondary structure																								.	.	.	.	.
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.						.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
		267
Predicted Secondary structure
Query SS confidence
Query Sequence		V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		302

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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