Job Description P04036 Confidence 98.46% Date Thu Jan 5 10:58:10 GMT 2012 Rank 157 Aligned Residues 119 % Identity 12% Template c2uyyD_ PDB info PDB header:cytokine Chain: D: PDB Molecule:n-pac protein; PDBTitle: structure of the cytokine-like nuclear factor n-pac Resolution 2.5 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	H	D	A	N	I	R	V	A	I	A	G	A	G	G	R	M	G	R	Q	L	I	Q	A	A	L	A	L	E	G	V	Q	L	G	A	A	L	E	R	E	G	S	S	L	L	G	S	D	A	G	E	L	A	G	A	G	K	T	G	V	T	V	Q	S	S	L	D	A	V	K	D	D	F	D	V	F	I	D	F	T
Query Conservation
Alig confidence															.															.						.															.	.	.	.	.	.	.	.
Template Conservation															.															.						.															.	.	.	.	.	.	.	.
Template Sequence		I	T	P	T	D	K	K	I	G	F	L	G	L	.	G	L	M	G	S	G	I	V	S	N	L	L	K	M	.	G	H	T	V	T	.	V	W	N	R	T	A	E	K	C	D	L	F	I	Q	.	.	.	.	.	.	.	.	E	G	A	R	L	G	R	T	P	A	E	V	V	S	T	C	D	I	T	F	A	C	V
Template Known Secondary structure						S	S								.	S													T	.	T					.				S	S	G	G	G	G						.	.	.	.	.	.	.	.	T	T					S										S
Template Predicted Secondary structure															.															.						.															.	.	.	.	.	.	.	.
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.		.	.	.	.	280	.	.	.	.	.	.	.	.	.		290	.	.	.	.		.	.	.	.	.	300	.	.	.	.	.	.	.	.									.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.							.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.			.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure																.	.	.	.	.	.																									.	.
Query SS confidence																.	.	.	.	.	.																									.	.
Query Sequence		R	P	E	G	T	L	N	H	L	A	F	C	R	Q	.	.	.	.	.	.	H	G	K	G	M	V	I	G	T	T	G	F	D	E	A	G	K	Q	A	I	R	D	A	A	.	.	A	D	I	A	I	V	F	A	A	N	F	S
Query Conservation																.	.	.	.	.	.																									.	.
Alig confidence																.	.	.	.	.	.																									.	.
Template Conservation
Template Sequence		S	D	P	K	A	A	K	D	L	V	L	G	P	S	G	V	L	Q	G	I	R	P	G	K	C	Y	V	D	M	S	T	V	D	A	D	T	V	T	E	L	A	Q	V	I	V	S	R	G	G	R	F	L	E	A	P	V	S	G
Template Known Secondary structure		S	S										S	T	T		G	G	G	G			T	T							S																	T	T										S
Template Predicted Secondary structure
Template SS confidence
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions