Job Description P04036 Confidence 96.12% Date Thu Jan 5 10:58:10 GMT 2012 Rank 441 Aligned Residues 98 % Identity 17% Template c2nvuB_ PDB info PDB header:protein turnover, ligase Chain: B: PDB Molecule:maltose binding protein/nedd8-activating enzyme PDBTitle: structure of appbp1-uba3~nedd8-nedd8-mgatp-ubc12(c111a), a2 trapped ubiquitin-like protein activation complex Resolution 2.80 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.																									.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	V	A	I	A	G	A	G	G	R	M	G	R	Q	L	I	Q	A	A	L	A	L	E	G	V	Q	L	G	A	A	L	E	R	E	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	L	L	G	S	D	A	G	E	L	A	G	A	G	K	T	G	V	T	V
Query Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.													.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.													.
Template Sequence		K	V	L	V	I	G	A	G	G	.	L	G	C	E	L	L	K	N	L	A	L	S	.	G	F	R	Q	I	H	V	I	D	M	D	T	I	D	V	S	N	L	N	R	Q	F	L	F	R	P	K	D	I	G	R	P	K	A	E	V	A	A	E	F	L	N	D	R	V	P	N	C	N	V	V	P	H	F	N	K	I
Template Known Secondary structure									S	S	.											T	T	.	T											B			G	G	G	G	G	T		T	T			G	G	G	T	T	S	B													S	T	T								S		G
Template Predicted Secondary structure											.													.
Template SS confidence
		2050	.	.	.	.	.	.	.	.		.	2060	.	.	.	.	.	.	.	.	.	2070		.	.	.	.	.	.	.	.	.	2080	.	.	.	.	.	.	.	.	.	2090	.	.	.	.	.	.	.	.	.	2100	.	.	.	.	.	.	.	.	.	2110	.	.	.	.	.	.	.	.	.	2120	.	.	.	.	.	.	.
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80		.	.	.	.	.	.	.	.	.	90	.	.	.													.	.	.	.	.	.	100	.		.	.	.	.	.
Predicted Secondary structure																				.														.	.	.	.	.	.	.	.	.	.	.	.									.
Query SS confidence																				.														.	.	.	.	.	.	.	.	.	.	.	.									.
Query Sequence		Q	S	S	L	D	A	V	K	D	D	F	D	V	F	I	D	F	T	.	R	P	E	G	T	L	N	H	L	A	F	C	R	.	.	.	.	.	.	.	.	.	.	.	.	Q	H	G	K	G	M	V	I	.	G	T	T	G	F
Query Conservation																				.														.	.	.	.	.	.	.	.	.	.	.	.									.
Alig confidence																				.														.	.	.	.	.	.	.	.	.	.	.	.									.
Template Conservation
Template Sequence		Q	D	F	N	D	T	F	Y	R	Q	F	H	I	I	V	C	G	L	D	S	I	I	A	R	R	W	I	N	G	M	L	I	S	L	L	N	Y	E	D	G	V	L	D	P	S	S	I	V	P	L	I	D	G	G	T	E	G	F
Template Known Secondary structure		G	G	S							T		S							S															T					T	T				G	G	G											T	T
Template Predicted Secondary structure
Template SS confidence
		2128	.	2130	.	.	.	.	.	.	.	.	.	2140	.	.	.	.	.	.	.	.	.	2150	.	.	.	.	.	.	.	.	.	2160	.	.	.	.	.	.	.	.	.	2170	.	.	.	.	.	.	.	.	.	2180	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions