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Job DescriptionP04036
Confidence97.08%DateThu Jan 5 10:58:10 GMT 2012
Rank340Aligned Residues203
% Identity13%Templatec2hlpB_
PDB info PDB header:oxidoreductaseChain: B: PDB Molecule:malate dehydrogenase; PDBTitle: crystal structure of the e267r mutant of a halophilic2 malate dehydrogenase in the apo form
Resolution2.59 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   7..10.........20.........30.........40.........50..... ....60.........70.........
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Query Sequence  RVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGA. . . GKTGVTVQSSLDAVKDDFDVFIDF. . . .
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Template Sequence  KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITAGIP
Template Known Secondary structure  TTTSTT

S

GGGTTT




GGGGTT
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Query Sequence  . . . . . . . . . . . . TRPEGTLNHLAFCRQHGKG. MVIGTTGFDEAGKQAIRDAAADIAI. VFAANFSVGVNVMLKLLEKAAK
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Template Sequence  RQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDLLNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFD
Template Known Secondary structure 

TT

TT
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SSTS
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TTT

T
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   102.......110.........120.........130.........140.........150.........160.........170.........180.
 
   146...150.........160 .........170.........180......
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Query Sequence  VMGDYTDIEIIEAHH. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . RHKVDAPSGTALAMGEAIAHALDKDL
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Template Sequence  APVQNVEGTILGEHGDAQVPVFSKVRVDGTDPEFSGDEKEQLLGDLQESAMDVIERKGATEWGPARGVAHMVEA. . . . . .
Template Known Secondary structure 

GGG


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   182.......190.........200.........210.........220.........230.........240.........250.....
 
   187..190.........200.........210.........220.......
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Query Sequence  KDCAVYSREGHTGERVPGTIGFATVRAGDIVGEHTAMFADI
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Template Sequence  . . . . . . . . . . . . ILHDTGRVLPASVKLEGEFGHEDTAFGVP
Template Known Secondary structure  ............TT

SGGG
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   261........270.........280.........
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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