Return to main results Retrieve Phyre Job Id

Job DescriptionP04036
Confidence97.51%DateThu Jan 5 10:58:10 GMT 2012
Rank288Aligned Residues153
% Identity18%Templatec1pzfD_
PDB info PDB header:oxidoreductaseChain: D: PDB Molecule:lactate dehydrogenase; PDBTitle: t.gondii ldh1 ternary complex with apad+ and oxalate
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40...... ...50.........60.. .......70......
Predicted Secondary structure 















..









..




Query SS confidence 













































. .















. .













Query Sequence  MHDANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLG. . SDAGELAGAGKTGVTV. . QSSLDAVKDDFDVF
Query Conservation 

   






  
 

  
   
      



           ..                ..   
       


Alig confidence 












.



















.










..















..













Template Conservation        

 



.
 

   
  
    
 

 .
 
           

            
        

  



Template Sequence  LVQRRKKVAMIGS. GMIGGTMGYLCALRELADVV. LYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCV
Template Known Secondary structure 

S


S
.ST

.
SSSSTT





STT
S
Template Predicted Secondary structure 







.




.












Template SS confidence 















































































   16...20........ .30.........40........ .50.........60.........70.........80.........90...
 
   77. .80.........90.........100.........110.........120........
Predicted Secondary structure  ..............
















..............
Query SS confidence 

. . . . . . . . . . . . . .

















































. . . . . . . . . . . . . .
Query Sequence  ID. . . . . . . . . . . . . . FTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAAADIAIVFAAN. . . . . . . . . . . . . .
Query Conservation 

.............. 
 
         

  
  






        
   
    

 
 
..............
Alig confidence 

..............














...............



















..............
Template Conservation 




     
       
  
   
  
  ............... 
   
    
 




 


 
  
      

Template Sequence  IVTAGLTKVPGKPDSEWSRNDLLPFNSKIIR. . . . . . . . . . . . . . . EIGQNIKKYCPKTFIIVVTNPLDCMVKVMCEASG
Template Known Secondary structure 

S
SS
TT

GGG

SGGG...............
TTS

SS
Template Predicted Secondary structure 














...............







Template SS confidence 















































































   95....100.........110.........120..... ....130.........140.........150.........
 
   129130..... ....140.........150. ........160.........170
Predicted Secondary structure  ......
.




...











Query SS confidence  . . . . . .






.















. . .


















Query Sequence  . . . . . . FSVGVNV. MLKLLEKAAKVMGDYT. . . DIEIIEAHHRHKVDAPSGT
Query Conservation  ......

 

 
.
      

  
    ...
 

 
 

  
 





Alig confidence  ......






.















...


















Template Conservation      



 

 


 
    

  
 
    
   


 

   

  
  
Template Sequence  VPTNMICGMACMLDSGRFRRYVADALSVSPRDVQATVIGTHGDCMVPLVRYI
Template Known Secondary structure 

TTS

TS
GGG

B
SSTT

GGG
Template Predicted Secondary structure 














Template SS confidence 



















































   155....160.........170.........180.........190.........200......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions