Job Description P45766 Confidence 95.86% Date Thu Jan 5 12:03:41 GMT 2012 Rank 96 Aligned Residues 161 % Identity 13% Template d1eh3a_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Transferrin Resolution 2.00

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.		.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.		.	.	.	.	.	.	.	.	120	.	.	.	.	.										.	.	.	.	130	.
Predicted Secondary structure																										.																										.															.	.	.	.	.	.	.	.	.
Query SS confidence																										.																										.															.	.	.	.	.	.	.	.	.
Query Sequence		D	I	C	R	G	V	A	A	A	V	F	G	D	D	T	K	V	K	Y	T	P	L	T	A	.	K	E	R	F	T	A	L	Q	S	G	E	V	D	L	L	S	R	N	T	T	W	T	S	S	R	.	D	A	G	M	G	M	A	F	T	G	V	T	Y	Y	.	.	.	.	.	.	.	.	.	D	G	I	G	F	L
Query Conservation																										.																										.															.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.									.																										.															.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.
Template Sequence		Q	W	Q	R	N	M	R	R	V	R	G	P	P	.	.	.	V	S	C	I	K	R	D	S	P	I	Q	C	I	Q	A	I	A	E	N	R	A	D	A	V	T	L	D	G	G	F	I	Y	E	A	G	L	A	P	Y	K	L	R	P	V	A	A	E	V	Y	G	T	E	R	Q	P	R	T	H	Y	Y	A	V	A	V
Template Known Secondary structure										T	T				.	.	.							S	S										T	T	S			B													S	T	T	T													S	S	S			S
Template Predicted Secondary structure															.	.	.
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.				.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.			.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure																						.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	H	D	K	A	G	L	K	S	A	K	E	L	D	G	A	T	V	C	I	.	.	Q	A	G	T	D	T	E	L	N	V	A	D	Y	F	K	A	N	N	M	K	Y	T	P	V	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																						.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.													.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.
Template Sequence		V	K	K	G	G	S	F	.	Q	L	N	E	L	Q	G	L	K	S	C	H	T	G	L	R	R	T	A	G	W	N	V	P	I	G	T	L	R	P	F	L	D	W	T	G	P	P	E	P	I	E	A	A	V	A	R	F	F	S	A	S	C	V	P	G	A	D	K	G	Q	F	P	N	L	C	R	L	C	A	G	T
Template Known Secondary structure				T	T				.		T	T			T	T						S		T	T		T	T	T	T								G	G	G	S					T	T	S								T	T	S	S					T	T	S		T	T	T		G	G	G	T	T	T
Template Predicted Secondary structure									.
Template SS confidence
		98	.	100	.	.	.	.		.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
														177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	F	D	R	S	D	E	S	A	K	A	L	E	S	G	R	C	D	T	L	A	S	D	Q	S	Q	L	Y	A	L	R	I	K	L	S	N	P	A	E	W	I	V	L	P	E	V	I	S	K	E	P	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	E	N	K	C	A	F	S	S	Q	E	P	Y	F	S	Y	S	G	A	F	K	C	L	R	D	G	A	G	D	V	A	F	I	K	E	S	T	V	F	E	D	L	S	D	E	A	E	R	D	E	Y	E	L	L	C	P	D	N	T	R	K	P	V
Template Known Secondary structure		G	G	G	T	T		S	S	T	T	S	T	T												T	T	S		S						S	S							S	S	G	G	G	G	G	G						T	T	S					G
Template Predicted Secondary structure
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions