Job Description P45766 Confidence 96.96% Date Thu Jan 5 12:03:41 GMT 2012 Rank 82 Aligned Residues 205 % Identity 12% Template d1amfa_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.75

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		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.		.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure																																																																	.
Query SS confidence																																																																	.
Query Sequence		G	F	V	Q	C	G	I	S	D	G	L	P	G	F	S	Y	A	D	A	D	G	K	F	S	G	I	D	V	D	I	C	R	G	V	A	A	A	V	F	G	D	D	T	K	V	K	Y	T	P	L	T	A	K	E	R	F	T	A	L	Q	S	G	E	.	V	D	L	L	S	R	N	T	T	W	T	S	S	R	D	A
Query Conservation																																																																	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.																						.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Template Sequence		G	K	I	T	V	F	A	.	.	.	.	.	.	.	.	.	.	.	.	A	A	S	L	T	N	A	M	Q	D	I	A	T	Q	F	K	K	E	K	G	.	.	.	V	D	V	V	S	S	F	A	S	S	S	T	L	A	R	Q	I	E	A	G	A	P	A	D	L	F	I	S	A	D	Q	K	W	M	D	Y	A	V
Template Known Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.		G	G	G																	.	.	.																				T				S					S	S
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Template SS confidence
		3	.	.	.	.	.	.													10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.				30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
		114	.	.	.	.	.	120				.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.						.	.	140	.	.	.	.	.					.	.	.	.	150	.	.			.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.					170	.	.	.	.	.
Predicted Secondary structure									.	.	.																		.	.	.	.	.									.	.	.	.								.	.																		.	.	.	.
Query SS confidence									.	.	.																		.	.	.	.	.									.	.	.	.								.	.																		.	.	.	.
Query Sequence		G	M	G	M	A	F	T	.	.	.	G	V	T	Y	Y	D	G	I	G	F	L	T	H	D	K	A	G	.	.	.	.	.	L	K	S	A	K	E	L	D	.	.	.	.	G	A	T	V	C	I	Q	.	.	A	G	T	D	T	E	L	N	V	A	D	Y	F	K	A	N	N	.	.	.	.	M	K	Y	T	P	V
Query Conservation									.	.	.																		.	.	.	.	.									.	.	.	.								.	.																		.	.	.	.
Alig confidence									.	.	.																		.	.	.	.	.									.	.	.	.								.	.																		.	.	.	.
Template Conservation
Template Sequence		D	K	K	A	I	D	T	A	T	R	Q	T	L	L	G	N	S	L	V	V	V	A	P	K	A	S	V	Q	K	D	F	T	I	D	S	K	T	N	W	T	S	L	L	N	G	G	R	L	A	V	G	D	P	E	H	V	P	A	G	I	Y	A	K	E	A	L	Q	K	L	G	A	W	D	T	L	S	P	K	L	A
Template Known Secondary structure			T	T		B		G	G	G															T	T									S	T	T								T	T								T	T	T														T	T						G	G	G
Template Predicted Secondary structure
Template SS confidence
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.				.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure																																																.	.	.
Query SS confidence																																																.	.	.
Query Sequence		T	F	D	R	S	D	E	S	A	K	A	L	E	S	G	R	C	D	T	L	A	S	D	Q	S	Q	L	Y	A	L	R	I	K	L	S	N	P	A	E	W	I	V	L	P	E	V	.	.	.	I	S	K	E	P	L	G	P	V	V	R	R	G	D	D	E	W	F	S	I	V	R	W	T	L	F	A	M	L	N	A
Query Conservation																																																.	.	.
Alig confidence																											.	.	.	.																		.	.	.																										.	.	.	.	.	.
Template Conservation																											.	.	.	.																																														.	.	.	.	.	.
Template Sequence		P	A	E	D	V	R	G	A	L	A	L	V	E	R	N	E	A	P	L	G	I	V	Y	G	S	.	.	.	.	D	A	V	A	S	K	G	V	K	V	V	A	T	F	P	E	D	S	H	K	K	V	E	Y	P	V	A	V	V	E	G	H	N	N	A	T	V	K	A	F	Y	D	Y	L	K	.	.	.	.	.	.
Template Known Secondary structure				S	S										T	T	S	S	S								.	.	.	.						S	S									G	G	G	S										B	T	T			S											T	.	.	.	.	.	.
Template Predicted Secondary structure																											.	.	.	.																																														.	.	.	.	.	.
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.					.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	E	M	G	I	N	S	Q	N	V	D	E	K	A	A	N	P	A	T	P	D	M	A	H	L	L	G	K	E	G
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	P	Q	A	A	E	I	F	K	R	Y	G
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S										T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																				218	.	220	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions