Job Description P45766 Confidence 100.00% Date Thu Jan 5 12:03:41 GMT 2012 Rank 11 Aligned Residues 219 % Identity 17% Template c3kzgB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:arginine 3rd transport system periplasmic binding PDBTitle: crystal structure of an arginine 3rd transport system2 periplasmic binding protein from legionella pneumophila Resolution 2.06 Å

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		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence		F	V	Q	C	G	I	S	D	G	L	P	G	F	S	Y	A	.	D	A	D	G	K	F	S	G	I	D	V	D	I	C	R	G	V	A	A	A	V	F	G	D	D	T	K	V	K	Y	T	P	L	T	A	K	E	R	F	T	A	L	Q	S	G	E	V	D	L	L	S	R	N	T	T	W	T	S	S	R	D	A	G
Query Conservation																		.
Alig confidence																		.																									.	.	.
Template Conservation																																											.	.	.
Template Sequence		N	L	T	I	G	T	S	K	F	N	P	P	F	E	V	W	S	G	N	N	S	S	L	Y	G	F	D	I	D	L	X	Q	E	I	C	R	R	L	H	A	T	.	.	.	C	T	F	E	A	Y	I	F	D	D	L	F	P	A	L	K	N	R	E	V	D	L	V	I	A	S	X	I	I	T	D	E	R	K	K	H
Template Known Secondary structure									S			T	T	T						T	T	S				S														T			.	.	.								G	G	G							T	T	S	S	S				S	S		B							T	T
Template Predicted Secondary structure																																											.	.	.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60				.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	G	M	A	F	T	G	V	T	Y	Y	D	G	I	G	F	L	T	H	D	K	A	G	L	K	S	A	K	E	L	D	G	A	T	V	C	I	Q	A	G	T	D	T	E	L	N	V	A	D	Y	F	K	A	N	N	M	K	Y	T	P	V	T	F	D	R	S	D	E	S	A	K	A	L	E	S	G	R	C	D	T
Query Conservation
Alig confidence		.	.																																																		.	.	.	.
Template Conservation		.	.																																																		.	.	.	.
Template Sequence		.	.	F	I	F	S	L	P	Y	X	E	S	N	S	Q	Y	I	T	T	V	D	S	K	I	S	T	F	D	D	L	H	G	K	K	I	G	V	R	K	G	T	P	Y	A	R	Q	V	L	S	E	N	.	.	.	.	R	N	N	Q	V	I	F	Y	E	L	I	Q	D	X	L	L	G	L	S	N	N	Q	V	D	A
Template Known Secondary structure		.	.							S	B										T	T		S			S	G	G	G	G	T	T							T	T	S	T								T		.	.	.	.	S								S	S										T	T	S	S	S
Template Predicted Secondary structure		.	.																																																		.	.	.	.
Template SS confidence
				97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.					.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210							.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.
Query Sequence		L	A	S	D	Q	S	Q	L	Y	A	L	R	I	K	L	S	.	.	.	.	.	.	N	P	A	E	W	I	V	L	P	E	V	I	S	K	E	P	L	G	P	V	V	R	R	G	D	D	E	W	F	S	I	V	R	W	T	L	F	A	M	L	N	A	E	E	M	G	I	N	S	Q	N	V	D	E	K	A	A	N
Query Conservation																		.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	L	X	D	Y	E	A	A	K	Y	W	X	A	S	E	P	Y	A	Y	K	L	I	G	K	K	Y	K	L	I	G	K	K	I	S	I	G	E	G	Y	S	I	X	A	N	P	D	Q	F	V	L	I	K	K	I	N	K	I	L	L	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure												T	T	S	S	S		S	S		T	T	T			S											T	T		B						G	G	G														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	T	P	D	M	A	H	L	L	G	K	E	G	D	Y	G	K	D	L	K	L	D	N	K	W	A	Y	N	I	I	K	Q	V	G	N	Y	S	E	I	F	E	R	N	V
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	X	E	A	D	G	T	Y	L	R	L	Y	S	E	Y	F
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																231	.	.	.	.	.	.	.	.	240	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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