Job Description P45766 Confidence 84.77% Date Thu Jan 5 12:03:41 GMT 2012 Rank 135 Aligned Residues 193 % Identity 10% Template c3kosA_ PDB info PDB header:transcription Chain: A: PDB Molecule:hth-type transcriptional activator ampr; PDBTitle: structure of the ampr effector binding domain from citrobacter2 freundii Resolution 1.83 Å

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		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	G	F	V	Q	C	G	I	S	D	G	L	P	G	F	S	Y	A	D	A	D	G	K	F	S	G	I	D	V	D	I	C	R	G	V	A	A	A	V	F	G	D	D	T	K	V	K	Y	T	P	L	T	A	K	E	R	F	T	A	L	Q	S	G	E	V	D	L	L	S	R	N	T	T	W	T	S	S	R	D	A
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.	.	.																.	.																				.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.																.	.																				.	.	.
Template Sequence		Q	E	K	L	K	I	G	V	V	G	T	F	.	.	.	.	.	.	.	.	.	.	.	A	I	G	C	L	F	P	L	L	S	D	F	K	R	S	.	.	Y	P	H	I	D	L	H	I	S	T	H	N	N	R	V	D	P	A	A	.	.	.	E	G	L	D	Y	T	I	R	Y	G	G	G	A	W	H	D	T	D
Template Known Secondary structure														.	.	.	.	.	.	.	.	.	.	.				T												.	.		T	T										S							.	.	.		T		S								S			T	T
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.																.	.																				.	.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.												.	.	.	.	.	110	.	.	.	.	.	.	.	.	.			120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.				.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.		.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure																																																														.
Query SS confidence																																																														.
Query Sequence		G	M	G	M	A	F	T	G	V	T	Y	Y	D	G	I	G	F	L	T	H	D	K	A	G	L	K	S	A	K	E	L	D	G	A	T	V	C	I	Q	A	G	T	D	T	E	L	N	V	A	D	Y	F	K	A	N	N	M	K	Y	T	.	P	V	T	F	D	R	S	D	E	S	A	K	A	L	E	S	G	R	C
Query Conservation																																																														.
Alig confidence						.																											.	.																												.
Template Conservation						.																											.	.
Template Sequence		A	Q	Y	L	.	C	S	A	L	X	S	P	L	C	S	P	T	L	A	S	Q	I	Q	T	P	A	D	I	L	K	F	.	.	P	L	L	R	S	Y	R	R	D	E	W	A	L	W	X	Q	T	V	G	E	A	P	P	S	P	T	H	N	V	X	V	F	D	S	S	V	T	X	L	E	A	A	Q	A	G	X	G
Template Known Secondary structure						.									B						T	T		S	S	G	G	G	G	G	G	S	.	.						S		T	T									T	T						T	T	S						S											T	T	S
Template Predicted Secondary structure						.																											.	.
Template SS confidence
		157	.	.	160		.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.			.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.				.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																												.	.	.
Query SS confidence																																												.	.	.
Query Sequence		D	T	L	A	S	D	Q	S	Q	L	Y	A	L	R	I	K	L	S	N	P	A	E	W	I	V	L	P	E	V	I	S	K	E	P	L	G	P	V	V	R	R	G	.	.	.	D	D	E	W	F	S	I	V	R	W	T	L	F	A	M
Query Conservation																																												.	.	.
Alig confidence										.	.	.	.																															.	.	.
Template Conservation										.	.	.	.
Template Sequence		V	A	I	A	P	V	R	X	.	.	.	.	F	T	H	L	L	S	S	E	R	I	V	Q	P	F	L	T	Q	I	D	L	G	S	Y	W	I	T	R	L	Q	S	R	P	E	T	P	A	X	R	E	F	S	R	W	L	T	G	V	L
Template Known Secondary structure		B					G	G	G	.	.	.	.							T	T	S	S	B							B		S									T	T	S
Template Predicted Secondary structure										.	.	.	.
Template SS confidence
		234	.	.	.	.	.	240	.					.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions