Job Description P45766 Confidence 100.00% Date Thu Jan 5 12:03:41 GMT 2012 Rank 3 Aligned Residues 255 % Identity 20% Template c3hv1A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:polar amino acid abc uptake transporter substrate PDBTitle: crystal structure of a polar amino acid abc uptake2 transporter substrate binding protein from streptococcus3 thermophilus Resolution 1.90 Å

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	N	Q	A	X	A	G	A	T	L	D	A	V	Q	K	K	G	F	V	Q	C	G	I	S	D	G	L	P	G	F	S	Y	A	D	A	D	G	K	F	S	G	I	D	V	D	I	C	R	G	V	A	A	A	V	F	G	D	D	T	K	V	K	Y	T	P	L	T	A	K	E	R	F	T	A	L	Q	S	G	E	V
Query Conservation
Alig confidence																																																											.	.	.
Template Conservation																																																											.	.	.
Template Sequence		S	H	F	A	T	Q	K	D	Q	W	Q	T	Y	T	K	E	K	K	I	K	I	G	F	D	A	T	F	V	P	X	G	Y	E	E	K	D	G	S	Y	I	G	F	D	I	D	L	A	N	A	V	F	K	L	Y	G	I	D	.	.	.	V	E	W	Q	A	I	D	W	D	X	K	E	T	E	L	K	N	G	T	I
Template Known Secondary structure			T	T	G	G	G	S										T								T			T	T	T					T	T	S																T	T	T			.	.	.								G	G	G								T	S
Template Predicted Secondary structure																																																											.	.	.
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.				.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.				.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure																																																																			.	.	.
Query SS confidence																																																																			.	.	.
Query Sequence		D	L	L	S	R	N	T	T	W	T	S	S	R	D	A	G	M	G	M	A	F	T	G	V	T	Y	Y	D	G	I	G	F	L	T	H	D	K	A	G	L	K	S	A	K	E	L	D	G	A	T	V	C	I	Q	A	G	T	D	T	E	L	N	V	A	D	.	.	.	Y	F	K	A	N	N	M	K	Y	T	P	V
Query Conservation																																																																			.	.	.
Alig confidence																		.	.																																																.	.	.
Template Conservation																		.	.
Template Sequence		D	L	I	W	N	G	Y	S	V	T	D	E	R	K	Q	S	.	.	A	D	F	T	E	P	Y	X	V	N	E	Q	V	L	V	T	K	K	S	S	G	I	D	S	V	A	G	X	A	G	K	T	L	G	A	Q	A	G	S	S	G	Y	D	A	F	N	A	S	P	K	I	L	K	D	V	V	A	N	Q	K	V	V
Template Known Secondary structure		S				S	S		B							T	T	.	.																		G	G	G				S	S	G	G	G	T	T							T	T											T	T	T	T	T	T	T	S	G	G	G
Template Predicted Secondary structure																		.	.
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120			.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	F	D	R	S	D	E	S	A	K	A	L	E	S	G	R	C	D	T	L	A	S	D	Q	S	Q	L	Y	A	L	R	I	K	L	S	N	P	A	E	W	I	V	L	P	E	V	I	S	K	E	P	L	G	P	V	V	R	R	G	D	D	E	W	F	S	I	V	R	W	T	L	F	A	M	L	N	A	E	E	M
Query Conservation
Alig confidence																																																																											.	.	.	.	.	.	.
Template Conservation																																																																											.	.	.	.	.	.	.
Template Sequence		Q	Y	S	T	F	T	Q	A	L	I	D	L	N	S	G	R	I	D	G	L	L	I	D	R	V	Y	A	N	Y	Y	L	E	K	S	G	V	L	D	Q	Y	N	V	X	P	A	G	Y	E	G	E	S	F	A	V	G	A	R	K	V	D	K	T	L	I	K	K	I	N	Q	G	F	E	T	.	.	.	.	.	.	.
Template Known Secondary structure				S	S											T	S		S																T	T		G	G	G							S	S											T	T															.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	N	S	Q	N	V	D	E	K	A	A	N	P	A	T	P	D	M	A	H	L	L	G	K	E	G	D	Y	G	K	D	L	K	L	D	N	K	W	A	Y	N	I	I	K	Q	V	G	N	Y	S	E	I	F	E	R	N	V	G	S	E	S	P	L	K	I	K	R	G	Q	N	N	L	W	N	N	G
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	Y	K	N	G	E	F	Q	K	I	S	N	K	W	F	G	E	D	.	.	.	.	V	A	T	D	Q	V	K	G	K	R	E	G
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T											S	S		.	.	.	.				T	T	T	T	T			T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.
Template SS confidence
																																													256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.					.	.	.	.	.	.	280	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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