Job Description P45766 Confidence 99.19% Date Thu Jan 5 12:03:41 GMT 2012 Rank 43 Aligned Residues 198 % Identity 14% Template c3hn0A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:nitrate transport protein; PDBTitle: crystal structure of an abc transporter (bdi_1369) from2 parabacteroides distasonis at 1.75 a resolution Resolution 1.75 Å

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		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.		.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.		110	.	.	.
Predicted Secondary structure																																																				.																									.
Query SS confidence																																																				.																									.
Query Sequence		F	V	Q	C	G	I	S	D	G	L	P	G	F	S	Y	A	D	A	D	G	K	F	S	G	I	D	V	D	I	C	R	G	V	A	A	A	V	F	G	D	D	T	K	V	K	Y	T	P	L	T	.	A	K	E	R	F	T	A	L	Q	S	G	E	V	D	L	L	S	R	N	T	T	W	T	S	.	S	R	D	A
Query Conservation																																																				.																									.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.																									.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	I	K	V	S	V	L	R	G	P	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	I	A	F	A	D	W	L	E	N	P	P	I	I	D	N	K	K	V	Q	V	K	V	V	D	S	P	D	L	A	Q	A	L	L	I	K	Q	E	T	D	I	A	V	L	P	X	I	N	A	A	N	L	Y	N	K
Template Known Secondary structure									S	S	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.				T						S					T	T									S											T	T			S															T
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.															.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.		.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.		.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure																																									.																						.
Query SS confidence																																									.																						.
Query Sequence		G	M	G	M	A	F	T	G	V	T	Y	Y	D	G	I	G	F	L	T	H	D	K	A	G	L	K	S	A	K	E	L	D	G	A	T	V	C	I	Q	.	A	G	T	D	T	E	L	N	V	A	D	Y	F	K	A	N	N	M	K	Y	T	.	P	V	T	F	D	R	S	D	E	S	A	K	A	L	E	S	G	R
Query Conservation																																									.																						.
Alig confidence									.	.	.	.	.	.	.	.																									.																						.
Template Conservation									.	.	.	.	.	.	.	.
Template Sequence		G	I	K	I	K	L	A	.	.	.	.	.	.	.	.	G	C	P	I	W	G	T	L	Y	L	V	E	K	T	P	L	K	E	P	A	L	Y	V	F	G	N	G	T	T	P	D	I	L	T	R	Y	Y	L	G	R	Q	R	L	D	Y	P	L	N	Y	A	F	N	T	A	G	E	I	T	Q	G	I	L	A	G	K
Template Known Secondary structure		T		S					.	.	.	.	.	.	.	.														S	S			S						S	S	T	T	S														T								S			S											T	S
Template Predicted Secondary structure									.	.	.	.	.	.	.	.
Template SS confidence
		91	.	.	.	.	.	.									.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.			.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure																																														.	.
Query SS confidence																																														.	.
Query Sequence		C	D	T	L	A	S	D	Q	S	Q	L	Y	A	L	R	I	K	L	S	N	P	A	E	W	I	V	L	P	E	V	I	S	K	E	P	L	G	P	V	V	R	R	G	D	.	.	D	E	W	F	S	I	V	R	W	T	L	F	A	M	L	N	A	E	E	M
Query Conservation																																														.	.
Alig confidence																																														.	.
Template Conservation
Template Sequence		V	N	R	A	V	L	G	E	P	F	L	S	I	A	L	R	K	D	S	S	L	R	I	T	A	D	L	N	H	L	T	D	N	D	T	L	G	F	A	Q	T	A	V	V	Y	T	P	T	X	E	K	Y	R	I	A	F	E	D	A	L	R	A	S	C	Q	K
Template Known Secondary structure			S						T	T										T	T										S	S	T	T		S	S											G	G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions