Job Description P45766 Confidence 98.90% Date Thu Jan 5 12:03:41 GMT 2012 Rank 53 Aligned Residues 202 % Identity 14% Template c3gxaA_ PDB info PDB header:protein binding Chain: A: PDB Molecule:outer membrane lipoprotein gna1946; PDBTitle: crystal structure of gna1946 Resolution 2.25 Å

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		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.		.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.				110
Predicted Secondary structure																																																				.																										.	.	.
Query SS confidence																																																				.																										.	.	.
Query Sequence		G	F	V	Q	C	G	I	S	D	G	L	P	G	F	S	Y	A	D	A	D	G	K	F	S	G	I	D	V	D	I	C	R	G	V	A	A	A	V	F	G	D	D	T	K	V	K	Y	T	P	L	.	T	A	K	E	R	F	T	A	L	Q	S	G	E	V	D	L	L	S	R	N	T	T	W	T	S	.	.	.	S
Query Conservation																																																				.																										.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.																						.	.	.							.																										.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Template Sequence		K	E	I	V	F	G	T	T	V	.	.	.	.	.	.	.	.	.	.	.	G	D	F	G	D	M	V	K	E	Q	I	Q	P	E	L	E	K	K	G	Y	T	.	.	.	V	K	L	V	E	F	T	D	Y	V	R	P	N	L	A	L	A	E	G	E	L	D	I	N	V	F	Q	H	K	P	Y	L	D	D	F	K
Template Known Secondary structure										T	.	.	.	.	.	.	.	.	.	.	.	T									T							T	T	T			.	.	.							S	S	S	S									T	S		S
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Template SS confidence
		43	.	.	.	.	.	.	50	.												.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.				.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.		.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure																																					.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	D	A	G	M	G	M	A	F	T	G	V	T	Y	Y	D	G	I	G	F	L	T	H	D	K	A	G	L	K	S	A	K	E	L	D	.	G	A	T	V	C	I	Q	A	G	T	D	T	E	L	N	V	A	D	Y	F	K	A	N	N	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																					.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.									.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.
Template Sequence		K	E	H	N	L	D	I	T	E	V	F	Q	V	P	T	A	P	L	G	L	Y	P	G	K	.	.	.	L	K	S	L	E	E	V	K	D	G	S	T	V	S	A	P	N	D	P	S	N	F	A	R	V	L	V	M	L	D	E	L	G	W	I	K	L	K	D	G	I	N	P	L	T	A	S	K	A	D	I	A	E
Template Known Secondary structure					T											B								S	S	.	.	.				G	G	G			T	T								S														T	T	S	S				T	T			G	G	G			G	G	G
Template Predicted Secondary structure																										.	.	.
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.				.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Y	T	P	V	T	F	D	R	S	D	E	S	A	K	A	L	E	S	G	R	C	D	T	L	A	S	D	Q	S	Q	L	Y	A	L	R	I	K	L	S	N	P	A	E	W	I	V	L	P	E	V	I	S	K	E	P	L	G	P	V	V	R	R	G	D	D	E	W	F	S	I	V	R	W	T	L	F	A	M	L
Query Conservation
Alig confidence																																.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	L	K	N	I	K	I	V	E	L	E	A	A	Q	L	P	R	S	R	A	D	V	D	F	A	V	V	N	G	N	.	.	.	.	Y	A	I	S	S	G	M	K	L	T	E	A	L	F	Q	E	P	S	F	A	Y	V	N	W	S	A	V	K	T	A	D	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			T	T									G	G	G					T	T	T	S	S								.	.	.	.					T	T			G	G	G		S							T	T								G	G	G	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.					.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	A	E	E	M	G	I	N	S	Q	N	V	D	E	K	A	A	N	P	A	T	P	D	M	A	H	L	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	D	S	Q	W	L	K	D	V	T	E	A	Y	N	S	D	A	F	K	A	Y	A
Template Known Secondary structure		.	.	.	.	.	.	.	T											T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.
Template SS confidence
									248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions