Job Description P45766 Confidence 99.46% Date Thu Jan 5 12:03:41 GMT 2012 Rank 38 Aligned Residues 241 % Identity 14% Template c3e4rA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:nitrate transport protein; PDBTitle: crystal structure of the alkanesulfonate binding protein2 (ssua) from the phytopathogenic bacteria xanthomonas3 axonopodis pv. citri bound to hepes Resolution 2.01 Å

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		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.		.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure																																																								.																									.
Query SS confidence																																																								.																									.
Query Sequence		K	K	G	F	V	Q	C	G	I	S	D	G	L	P	G	F	S	Y	A	D	A	D	G	K	F	S	G	I	D	V	D	I	C	R	G	V	A	A	A	V	F	G	D	D	T	K	V	K	Y	T	P	L	T	A	.	K	E	R	F	T	A	L	Q	S	G	E	V	D	L	L	S	R	N	T	T	W	T	S	S	.
Query Conservation																																																								.																									.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.									.											.																									.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.	.									.
Template Sequence		E	P	A	Q	L	R	I	G	Y	Q	K	A	V	S	S	L	V	L	A	K	Q	H	R	.	.	.	.	.	.	.	.	.	.	.	.	L	L	E	Q	R	F	P	R	.	T	K	I	T	W	V	E	F	P	A	G	P	Q	L	L	E	A	L	N	V	G	S	I	D	L	G	G	A	G	D	I	P	P	L	F	A
Template Known Secondary structure				S								T	T										T	T	.	.	.	.	.	.	.	.	.	.	.	.							T	T	.	S								S	S										T	T	S		S						S
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.									.
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.													50	.	.	.	.	.	.	.		.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
				111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.			.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure		.	.																																																																	.	.
Query SS confidence		.	.																																																																	.	.
Query Sequence		.	.	R	D	A	G	M	G	M	A	F	T	G	V	T	Y	Y	D	G	I	G	F	L	T	H	D	K	A	G	L	K	S	A	K	E	L	D	G	A	T	V	C	I	Q	A	G	T	D	T	E	L	N	V	A	D	Y	F	K	A	N	N	M	K	Y	T	P	.	.	V	T	F	D	R	S	D	E	S	A	K	A
Query Conservation		.	.																																																																	.	.
Alig confidence		.	.																																																																	.	.
Template Conservation
Template Sequence		Q	A	A	G	A	D	L	L	Y	V	G	W	V	P	P	T	P	K	A	E	T	I	L	V	P	S	K	S	A	L	R	T	V	A	D	L	K	G	K	R	I	A	F	Q	K	G	S	S	A	H	N	L	L	L	R	V	L	A	K	S	G	L	S	M	R	D	I	T	P	L	Y	L	S	P	A	N	A	R	A	A
Template Known Secondary structure				T	T													G	G	G							T	T					S	G	G	G	G	T	T							T	T	S													T	T			G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.			.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure																																												.	.
Query SS confidence																																												.	.
Query Sequence		L	E	S	G	R	C	D	T	L	A	S	D	Q	S	Q	L	Y	A	L	R	I	K	L	S	N	P	A	E	W	I	V	L	P	E	V	I	S	K	E	P	L	G	.	.	P	V	V	R	R	G	D	D	E	W	F	S	I	V	R	W	T	L	F	A	M	L	N	A	E	E	M	G	I	N	S	Q	N	V	D	E
Query Conservation																																												.	.
Alig confidence																									.	.	.																	.	.																												.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.																																														.	.	.	.	.	.	.	.	.
Template Sequence		F	A	A	G	Q	V	D	A	W	A	I	W	D	P	W	Y	S	A	L	T	L	D	G	.	.	.	S	A	R	L	L	A	N	G	E	G	L	G	L	T	G	G	F	F	L	S	S	R	R	Y	A	T	A	W	G	P	F	V	Q	Q	V	M	G	T	L	N	Q	A	D	G	L	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				T	T			S						T	T								T	T	.	.	.	S							S	T	T	S																	T																T		.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																									.	.	.																																														.	.	.	.	.	.	.	.	.
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.				.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	A	N	P	A	T	P	D	M	A	H	L	L	G	K	E	G	D	Y	G	K	D	L	K	L	D	N	K	W	A	Y	N	I	I	K	Q	V	G	N	Y	S
Query Conservation
Alig confidence		.	.	.												.	.	.	.	.
Template Conservation		.	.	.												.	.	.	.	.
Template Sequence		.	.	.	L	E	R	D	R	A	G	S	I	K	T	.	.	.	.	.	L	A	Q	V	S	G	L	P	P	A	V	V	E	R	T	L	A	H	R	P	P	A	S
Template Known Secondary structure		.	.	.				T								.	.	.	.	.																		T
Template Predicted Secondary structure		.	.	.												.	.	.	.	.
Template SS confidence
					242	.	.	.	.	.	.	.	250	.	.						.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions