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Job DescriptionP45766
Confidence98.49%DateThu Jan 5 12:03:41 GMT 2012
Rank62Aligned Residues178
% Identity13%Templatec3b50A_
PDB info PDB header:transport proteinChain: A: PDB Molecule:sialic acid-binding periplasmic protein siap; PDBTitle: structure of h. influenzae sialic acid binding protein2 bound to neu5ac.
Resolution1.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   63......70.........80.... .....90.........100.........110.........120...
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Query Sequence  DICRGVAAAVFGDDTKVKYTPL. . . . TAKERFTALQSGEVDLLSRNTTWTSSRDAGMGMAFTGVT. . . . . . . . . . . . . . .
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Template Sequence  MFAKEVKEKSQGK. IEISLYPSSQLGDDRAMLKQLKDGSLDFTFAESARFQLFYPEAAVFALPYVISNYNVAQKALFDTE
Template Known Secondary structure  TTTS.
TTTT

TS


GGGGGGTSGGGGGGGSTTTS
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   23......30..... ....40.........50.........60.........70.........80.........90.........100.
 
   124.....130.........140.........150.........160.........170.........180...
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Query Sequence  . . . . . . . . . . . . . . . . . . . . YYDGIGFLTHDKAGLKSAKELDGATVCIQAGTDTELNVADYFKANNMKYTPVTFDRSDES
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Template Sequence  FGKDLIKKMDKDLGVTLLSQAYNGTRQT. TSNRAINSIADMKGLKLRVPNAATNLAYAKY. . . . . . VGASPTPM. AFSEV
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SGGGGTT

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GGG
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   102.......110.........120......... 130.........140.........150.........160 ........ .170...
 
   184.....190.........200.........210.........220.........230.... .....240.........250..
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Query Sequence  AKALESGRCDTLASDQSQLYALRIKLSNPAEWIVLPEVISKEPLGPVVRRG. . . . . DDEWFSIVRWTLFAMLNA
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Template Sequence  YLALQTNAVDGQENPLAAVQAQ. . KFYEVQKFLAMTN. HILNDQLYLVSNETYKELPEDLQKVVKDAAENAAKY
Template Known Secondary structure  TTSSST..TGGGS
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   174.....180.........190..... ....200........ .210.........220.........230.........240....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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