Job Description P45766 Confidence 99.38% Date Thu Jan 5 12:03:41 GMT 2012 Rank 42 Aligned Residues 238 % Identity 15% Template c2x26A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:periplasmic aliphatic sulphonates-binding protein; PDBTitle: crystal structure of the periplasmic aliphatic sulphonate2 binding protein ssua from escherichia coli Resolution 1.75 Å

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		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.		.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.		.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure																																																					.																	.
Query SS confidence																																																					.																	.
Query Sequence		F	V	Q	C	G	I	S	D	G	L	P	G	F	S	Y	A	D	A	D	G	K	F	S	G	I	D	V	D	I	C	R	G	V	A	A	A	V	F	G	D	D	T	K	V	K	Y	T	P	L	T	A	.	K	E	R	F	T	A	L	Q	S	G	E	V	D	L	L	S	.	R	N	T	T	W	T	S	S	R	D	A
Query Conservation																																																					.																	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.									.											.																	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.									.
Template Sequence		A	L	R	I	G	Y	Q	K	G	S	I	G	M	V	L	A	K	S	H	Q	.	.	.	.	.	.	.	.	.	.	.	.	L	L	E	K	R	Y	P	E	.	S	K	I	S	W	V	E	F	P	A	G	P	Q	M	L	E	A	L	N	V	G	S	I	D	L	G	S	T	G	D	I	P	P	I	F	A	Q	A	A
Template Known Secondary structure									T	T										T	T	.	.	.	.	.	.	.	.	.	.	.	.							T	T	.	S								S	S											T	S		S						S									T
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.									.
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.													.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
		114	.	.	.	.	.	120	.	.	.	.	.			.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170			.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.																																														.	.
Query SS confidence														.	.																																														.	.
Query Sequence		G	M	G	M	A	F	T	G	V	T	Y	Y	.	.	D	G	I	G	F	L	T	H	D	K	A	G	L	K	S	A	K	E	L	D	G	A	T	V	C	I	Q	A	G	T	D	T	E	L	N	V	A	D	Y	F	K	A	N	N	M	.	.	K	Y	T	P	V	T	F	D	R	S	D	E	S	A	K	A	L	E	S
Query Conservation														.	.																																														.	.
Alig confidence														.	.																																														.	.
Template Conservation
Template Sequence		G	A	D	L	V	Y	V	G	V	E	P	P	K	P	K	A	E	V	I	L	V	A	E	N	S	P	I	K	T	V	A	D	L	K	G	H	K	V	A	F	Q	K	G	S	S	S	H	N	L	L	L	R	A	L	R	Q	A	G	L	K	F	T	D	I	Q	P	T	Y	L	T	P	A	D	A	R	A	A	F	Q	Q
Template Known Secondary structure		T													G	G	G							T	T		S			S	G	G	G	G	T	T	S						T	T	S													T	T			G	G	G	S																T
Template Predicted Secondary structure
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.			.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure																																																.	.
Query SS confidence																																																.	.
Query Sequence		G	R	C	D	T	L	A	S	D	Q	S	Q	L	Y	A	L	R	I	K	L	S	N	P	A	E	W	I	V	L	P	E	V	I	S	K	E	P	L	G	P	V	V	R	R	G	D	.	.	D	E	W	F	S	I	V	R	W	T	L	F	A	M	L	N	A	E	E	M	G	I	N	S	Q	N	V	D	E	K	A	A
Query Conservation																																																.	.
Alig confidence																						.	.	.																								.	.																					.	.
Template Conservation																						.	.	.																																														.	.
Template Sequence		G	N	V	D	A	W	A	I	W	D	P	Y	Y	S	A	A	L	L	Q	G	.	.	.	G	V	R	V	L	K	D	G	T	D	L	N	Q	T	G	S	F	Y	L	A	A	R	P	Y	A	E	K	N	G	A	F	I	Q	G	V	L	A	T	F	S	E	A	D	A	L	.	.	T	R	S	Q	R	E	Q	S	I	A
Template Known Secondary structure		T	S	S	S						T	T									S	.	.	.	S							S	T	T	S																	T																		.	.				T
Template Predicted Secondary structure																						.	.	.																																														.	.
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.				.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.			240	.	.	.	.	.	.	.	.	.
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	P	A	T	P	D	M	A	H	L	L	G	K	E	G	D	Y	G	K	D	L	K	L	D	N	K	W	A	Y	N	I	I	K	Q	V	G	N	Y	S
Query Conservation
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	A	K	T	M	G	L	P	A	P	V	I	A	S	Y	L	D	H	R	P	P	T	T
Template Known Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T												T
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		250																.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions