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Job DescriptionP45766
Confidence99.97%DateThu Jan 5 12:03:41 GMT 2012
Rank23Aligned Residues215
% Identity13%Templatec2rc9A_
PDB info PDB header:membrane proteinChain: A: PDB Molecule:glutamate [nmda] receptor subunit 3a; PDBTitle: crystal structure of the nr3a ligand binding core complex with acpc at2 1.96 angstrom resolution
Resolution1.96 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   43......50.........60.........70.........80..... ....90.........100.........110.
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Query Sequence  DGLPGFSYADADGKFSGIDVDICRGVAAAVFGDDTKVKYTPLT. . . . . . . . . . . AKERFTALQSGEVDLLSRNTTWTSSR
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Template Sequence  HSSNDTVPIKFKKCCYGYCIDLLEQLAEDMN. . . FDFDLYIVGDGKYGAWKNGHWTGLVGDLLSGTANMAVTSFSINTAR
Template Known Secondary structure  TSSS



GGGST...
TT




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B

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   54.....60.........70.........80.... .....90.........100.........110.........120.........130
 
   112.......120.........130....... ..140.........150.........160.........170.........180....
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Query Sequence  DAGMGMAFTGVTYYDGIGFLTHDKAG. . . . . . . LKSAKELDGATVCIQAGTDTELNVADYFKANNMKYTPVTFDRSDESA
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Template Sequence  SQV. . IDFTSPFFSTSLGILVRTRGTELSGIHDPKLHHPSQGFRFGTVRESSAEDYVRQSFPEMHEYMRRYNVPATPDGV
Template Known Secondary structure  TT..S
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STTS



STT
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TT


BTTS
GGG
BSS
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   131.. ......140.........150.........160.........170.........180.........190.........200........
 
   185....190.. .......200.........210.........220.........230.........240.........250.........260..
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Query Sequence  KALESGRC. . DTLASDQSQLYALRIKLSNPAEWIVLPEVISKEPLGPVVRRGDDEWFSIVRWTLFAMLNAEEMGINSQNV
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Template Sequence  QYLKNDPEKLDAFIMDKALLDYEVSIDAD. CKLLTVGKPFAIEGYGIGLPPNSP. LTSNISELISQ. . . . . . . . . . . . . .
Template Known Secondary structure  SSS


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   209210.........220.........230....... ..240.........250.........260. ........270..
 
   263......270.........280.........290.........300.........310....
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Query Sequence  DEKAANPATPDMAHLLGKEGDYGKDLKLDNKWAYNIIKQVGNYSEIFERNVG
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . YKSHGFMDVLHDKWYK
Template Known Secondary structure  ....................................TTTT
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   273......280........
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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