Job Description P45766 Confidence 98.26% Date Thu Jan 5 12:03:41 GMT 2012 Rank 64 Aligned Residues 140 % Identity 13% Template c2qpqC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:protein bug27; PDBTitle: structure of bug27 from bordetella pertussis Resolution 1.92 Å

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		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.							.	.	.	.	.	150	.				.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.								.	.	.
Query SS confidence																															.	.	.	.	.	.								.	.	.
Query Sequence		G	M	A	F	T	G	V	T	Y	Y	D	G	I	G	F	L	T	H	D	K	A	G	L	K	S	A	K	E	L	.	.	.	.	.	.	D	G	A	T	V	C	I	.	.	.	Q	A	G	T	D	T	E	L	N	V	A	D	Y	F	K	A	N	N	M	K	Y	T	P	V	T	F	D	R	S	D	E	S	A	K	A
Query Conservation																															.	.	.	.	.	.								.	.	.
Alig confidence																															.	.	.	.	.	.								.	.	.
Template Conservation
Template Sequence		D	F	A	A	V	I	N	V	A	Y	V	P	S	V	F	V	V	P	A	G	S	K	Y	K	T	L	G	E	L	M	A	A	A	K	Q	T	N	T	Q	V	T	Y	G	S	C	G	N	G	T	P	Q	H	L	A	G	E	L	L	N	V	S	A	K	T	H	M	V	H	V	P	Y	K	G	C	G	P	A	L	N	D
Template Known Secondary structure		S																		T	T		S			S								T		S	S	S								S	S	T	T	S														T									S	S
Template Predicted Secondary structure
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.																			.	.	.	230	.	.	.	.		.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.
Query Sequence		L	E	S	G	R	C	D	T	L	A	S	D	Q	S	Q	L	Y	A	L	R	I	K	L	S	N	P	A	E	W	I	V	L	P	E	V	I	S	K	E	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	G	P	V	V	R	R	G	.	D	D	E	W	F	S	I	V	R	W	T	L	F
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.
Alig confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.
Template Conservation
Template Sequence		V	L	G	S	Q	I	G	L	A	V	V	T	A	S	S	A	I	P	F	I	K	A	G	K	L	Q	A	L	A	V	T	S	K	E	R	S	A	L	L	P	E	V	P	T	V	A	E	Q	G	V	A	G	Y	E	L	N	Q	W	H	G	L	L	V	P	G	A	T	P	M	A	V	R	Q	K	L	Y	D	G	I	A
Template Known Secondary structure				T	T	S	S	S															T	T	S							S	S	S	S			T	T		T	T	S		B	S	G	G	G	T		T	T													T	T	S
Template Predicted Secondary structure
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		248	.	250	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	M	L	N	A	E	E	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	V	M	Q	R	D	D	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		252	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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