Job Description P45766 Confidence 79.42% Date Thu Jan 5 12:03:41 GMT 2012 Rank 139 Aligned Residues 197 % Identity 11% Template c2h9bB_ PDB info PDB header:transcription Chain: B: PDB Molecule:hth-type transcriptional regulator benm; PDBTitle: crystal structure of the effector binding domain of a benm variant2 (benm r156h/t157s) Resolution 1.80 Å

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		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	F	V	Q	C	G	I	S	D	G	L	P	G	F	S	Y	A	D	A	D	G	K	F	S	G	I	D	V	D	I	C	R	G	V	A	A	A	V	F	G	D	D	T	K	V	K	Y	T	P	L	T	A	K	E	R	F	T	A	L	Q	S	G	E	V	D	L	L	S	R	N	T	T	W	T	S	S	R	D	A	G
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.	.	.																	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.																	.	.
Template Sequence		K	T	I	R	I	G	F	V	G	S	L	L	.	.	.	.	.	.	.	.	.	.	.	F	G	L	L	P	R	I	I	H	L	Y	R	Q	A	H	P	.	.	N	L	R	I	E	L	Y	E	M	G	T	K	A	Q	T	E	A	L	K	E	G	R	I	D	A	G	F	G	R	L	K	I	S	D	P	A	I	K	H
Template Known Secondary structure										G	G	G	G	.	.	.	.	.	.	.	.	.	.	.	G	T	T													T	.	.	T																				T	S		S					S	S					T	T
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.																	.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.												.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.			.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.		.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.				.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.		.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.																			.	.	.																						.
Query SS confidence																								.																			.	.	.																						.
Query Sequence		M	G	M	A	F	T	G	V	T	Y	Y	D	G	I	G	F	L	T	H	D	K	A	.	G	L	K	S	A	K	E	L	D	G	A	T	V	C	I	Q	A	G	.	.	.	T	D	T	E	L	N	V	A	D	Y	F	K	A	N	N	M	K	Y	T	P	V	.	T	F	D	R	S	D	E	S	A	K	A	L	E	S
Query Conservation																								.																			.	.	.																						.
Alig confidence																								.																			.	.	.																						.
Template Conservation
Template Sequence		S	L	L	R	N	E	R	L	M	V	A	V	H	A	S	H	P	L	N	Q	M	K	D	K	G	V	H	L	N	D	L	I	D	E	K	I	L	L	Y	P	S	S	P	K	P	N	F	S	T	H	V	M	N	I	F	S	D	H	G	L	E	P	T	K	I	N	E	V	R	E	V	Q	L	A	L	G	L	V	A	A
Template Known Secondary structure															T	T	S	G	G	G	G	G	T	T	T		B		G	G	G	S	T	T	S								S	S	S	S	S											T	T	T				S						S											T
Template Predicted Secondary structure
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.			.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																															.	.
Query SS confidence																																															.	.
Query Sequence		G	R	C	D	T	L	A	S	D	Q	S	Q	L	Y	A	L	R	I	K	L	S	N	P	A	E	W	I	V	L	P	E	V	I	S	K	E	P	L	G	P	V	V	R	R	G	.	.	D	D	E	W	F	S	I	V	R	W	T	L	F	A	M
Query Conservation																																															.	.
Alig confidence												.	.	.	.	.																															.	.
Template Conservation												.	.	.	.	.
Template Sequence		G	E	G	I	S	L	V	P	A	S	.	.	.	.	.	T	Q	S	I	Q	L	F	N	L	S	Y	V	P	L	L	D	P	D	A	I	T	P	I	Y	I	A	V	R	N	M	E	E	S	T	Y	I	Y	S	L	Y	E	T	I	R	Q	I	Y
Template Known Secondary structure		T	S		B					G	G	.	.	.	.	.	G	G	G				T	T						B		S	T	T											S	S
Template Predicted Secondary structure												.	.	.	.	.
Template SS confidence
		237	.	.	240	.	.	.	.	.	.						.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions