Job Description P45766 Confidence 98.83% Date Thu Jan 5 12:03:41 GMT 2012 Rank 55 Aligned Residues 217 % Identity 14% Template c2g29A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:nitrate transport protein nrta; PDBTitle: crystal structure of the periplasmic nitrate-binding2 protein nrta from synechocystis pcc 6803 Resolution 1.50 Å

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		33	.	.	.	.	.	.	40	.	.	.			.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.		.	.	.	.	.	80	.	.	.	.	.	.						.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure													.	.																																.													.	.	.	.	.
Query SS confidence													.	.																																.													.	.	.	.	.
Query Sequence		K	K	G	F	V	Q	C	G	I	S	D	.	.	G	L	P	G	F	S	Y	A	D	A	D	G	K	F	S	G	I	D	V	D	I	C	R	G	V	A	A	A	V	F	G	.	D	D	T	K	V	K	Y	T	P	L	T	A	.	.	.	.	.	K	E	R	F	T	A	L	Q	S	G	E	V	D	L	L	S	R	N
Query Conservation													.	.																																.													.	.	.	.	.
Alig confidence													.	.													.	.	.	.	.	.	.	.	.	.	.	.								.		.	.	.									.	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.	.										.	.	.
Template Sequence		E	V	T	T	A	K	L	G	F	I	A	L	T	D	A	A	P	L	I	I	A	K	E	K	G	.	.	.	.	.	.	.	.	.	.	.	.	F	Y	A	K	Y	G	M	P	D	.	.	.	V	E	V	L	K	Q	A	S	W	G	T	T	R	D	N	L	V	L	G	S	A	S	G	G	I	D	G	A	H	I	L
Template Known Secondary structure		S		S								S	S	G	G	G									T	T	.	.	.	.	.	.	.	.	.	.	.	.					T	T		T	T	.	.	.							S													G	G	G	T	S		S
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.										.	.	.
Template SS confidence
		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.													.	.	.	.	.	90	.	.	.				.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
		105	.	.	.	.	110								.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.												.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.		.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.																		.
Query SS confidence								.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.																		.
Query Sequence		T	T	W	T	S	S	.	.	.	.	.	.	.	R	D	A	G	M	G	M	A	F	T	G	V	T	Y	Y	D	G	I	G	F	L	T	H	D	.	.	.	.	.	.	.	.	.	.	.	K	A	G	L	K	S	A	K	E	L	D	G	A	T	V	C	I	.	Q	A	G	T	D	T	E	L	N	V	A	D	Y	F
Query Conservation								.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.																		.
Alig confidence								.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.																		.
Template Conservation
Template Sequence		T	P	M	P	Y	L	I	T	M	G	T	V	T	D	G	K	P	T	P	M	Y	I	L	A	R	L	N	V	N	G	Q	G	I	Q	L	G	N	N	Y	K	D	L	K	V	G	T	D	A	A	P	L	K	E	A	F	A	K	V	T	D	P	K	V	A	M	T	F	P	G	G	T	H	D	M	W	I	R	Y	W	L
Template Known Secondary structure		T										T	T	S	S	S													B	S								G	G	G	G	G	G				S			T	T							T	S	S	S						S	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
		166	.	.	.	170	.				.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.																																																																					.	.	.
Query SS confidence								.	.	.																																																																					.	.	.
Query Sequence		K	A	N	N	M	K	.	.	.	Y	T	P	V	T	F	D	R	S	D	E	S	A	K	A	L	E	S	G	R	C	D	T	L	A	S	D	Q	S	Q	L	Y	A	L	R	I	K	L	S	N	P	A	E	W	I	V	L	P	E	V	I	S	K	E	P	L	G	P	V	V	R	R	G	D	D	E	W	F	.	.	.
Query Conservation								.	.	.																																																																					.	.	.
Alig confidence								.	.	.																														.	.																														.								.	.	.
Template Conservation																																								.	.																														.
Template Sequence		A	A	G	G	M	E	P	G	K	D	F	S	T	I	V	V	P	P	A	Q	M	V	A	N	V	K	V	N	A	M	E	S	F	C	V	G	E	P	.	.	W	P	L	Q	T	V	N	Q	G	V	G	Y	Q	A	L	T	T	G	Q	L	W	K	D	H	P	E	K	A	F	.	G	M	R	A	D	W	V	D	Q	N
Template Known Secondary structure				T	T			B	T	T	T	B							G	G	G							T	T	S		S						T	T	.	.									T	S							G	G	G	T	B	T	T		B					.
Template Predicted Secondary structure																																								.	.																														.
Template SS confidence
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.			.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.		.	.	.	.	.	.	.	.	280	.
			240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	S	I	V	R	W	T	L	F	A	M	L	N	A	E	E	M	G	I	N	S	Q	N	V	D	E	K	A	A
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		P	K	A	A	K	A	L	L	M	A	V	M	E	A	Q	Q	W	C	D	Q	A	E	N	K	E	E	M	C	Q
Template Known Secondary structure																						G	G	G
Template Predicted Secondary structure
Template SS confidence
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions