Job Description P45766 Confidence 79.02% Date Thu Jan 5 12:03:41 GMT 2012 Rank 142 Aligned Residues 198 % Identity 11% Template c2f78A_ PDB info PDB header:gene regulation Chain: A: PDB Molecule:hth-type transcriptional regulator benm; PDBTitle: benm effector binding domain with its effector benzoate Resolution 2.05 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	G	F	V	Q	C	G	I	S	D	G	L	P	G	F	S	Y	A	D	A	D	G	K	F	S	G	I	D	V	D	I	C	R	G	V	A	A	A	V	F	G	D	D	T	K	V	K	Y	T	P	L	T	A	K	E	R	F	T	A	L	Q	S	G	E	V	D	L	L	S	R	N	T	T	W	T	S	S	R	D	A
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.	.	.	.															.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.															.	.
Template Sequence		E	K	T	I	R	I	G	F	V	G	S	L	L	.	.	.	.	.	.	.	.	.	.	.	F	G	L	L	P	R	I	I	H	L	Y	R	Q	A	.	.	H	P	N	L	R	I	E	L	Y	E	M	G	T	K	A	Q	T	E	A	L	K	E	G	R	I	D	A	G	F	G	R	L	K	I	S	D	P	A	I	K
Template Known Secondary structure		S									G	G	G	G	.	.	.	.	.	.	.	.	.	.	.	G	T	T												.	.		T	T																				T	S		S					S						T	T
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.															.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.												.	.	.	.	.	.	.	.	110	.	.	.	.	.			.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.		.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.				.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.		.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.																				.	.	.																		.
Query SS confidence																									.																				.	.	.																		.
Query Sequence		G	M	G	M	A	F	T	G	V	T	Y	Y	D	G	I	G	F	L	T	H	D	K	A	.	G	L	K	S	A	K	E	L	D	G	A	T	V	C	I	Q	A	G	T	.	.	.	D	T	E	L	N	V	A	D	Y	F	K	A	N	N	M	K	Y	.	T	P	V	T	F	D	R	S	D	E	S	A	K	A	L	E
Query Conservation																									.																				.	.	.																		.
Alig confidence																									.																				.	.	.																		.
Template Conservation
Template Sequence		R	T	L	L	R	N	E	R	L	M	V	A	V	H	A	S	H	P	L	N	Q	M	K	D	K	G	V	H	L	N	D	L	I	D	E	K	I	L	L	Y	P	S	S	P	K	P	N	F	S	T	H	V	M	N	I	F	S	D	H	G	L	E	P	T	K	I	N	E	V	R	E	V	Q	L	A	L	G	L	V	A
Template Known Secondary structure																T	T	S	G	G	G	G	G	T	T	T		B		G	G	G	S	T	T	S								S	S	S	S	S											T	T	T				S	S					S	S
Template Predicted Secondary structure
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.			.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																.	.
Query SS confidence																																																.	.
Query Sequence		S	G	R	C	D	T	L	A	S	D	Q	S	Q	L	Y	A	L	R	I	K	L	S	N	P	A	E	W	I	V	L	P	E	V	I	S	K	E	P	L	G	P	V	V	R	R	G	.	.	D	D	E	W	F	S	I	V	R	W	T	L	F	A	M
Query Conservation																																																.	.
Alig confidence													.	.	.	.	.																															.	.
Template Conservation													.	.	.	.	.
Template Sequence		A	G	E	G	I	S	L	V	P	A	S	.	.	.	.	.	T	Q	S	I	Q	L	F	N	L	S	Y	V	P	L	L	D	P	D	A	I	T	P	I	Y	I	A	V	R	N	M	E	E	S	T	Y	I	Y	S	L	Y	E	T	I	R	Q	I	Y
Template Known Secondary structure			T	S		B					G	G	.	.	.	.	.	G	G	G				T	T						B			T	T											S	S
Template Predicted Secondary structure													.	.	.	.	.
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.						.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions