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Job DescriptionP45766
Confidence98.58%DateThu Jan 5 12:03:41 GMT 2012
Rank59Aligned Residues189
% Identity11%Templatec2f5xC_
PDB info PDB header:transport proteinChain: C: PDB Molecule:bugd; PDBTitle: structure of periplasmic binding protein bugd
Resolution1.72 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   64.....70.........80.........90..... ....100.........110. ........120.........
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Query Sequence  ICRGVAAAVFGDDTKVKYTPLTAKERFTALQS. . . . . . GEVDLLSRNTTWTSSR. . . . . . . . DAGMGMAFTGVTYYDGIG
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Template Sequence  LAESXRPTLGET. . . VVVENKGGAGGTIGTTQVARAQPDGYSILLXHAGFSTAPSLYKNPGYEPYTSFEPIGLVVDVPXT
Template Known Secondary structure  SS
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GGGTS
SSSSTGGGT
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SS
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   26...30....... ..40.........50.........60.........70.........80.........90.........100..
 
   130.........140.... .....150.. .......160.........170.........180.........190.........200
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Query Sequence  FLTHDKAGLKSAKEL. . . . . . . . DGATVCIQ. AGTDTELNVADYFKANNMKYTPVTFDRSDESAKALESGRCDTLASDQS
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Template Sequence  IIARGDFPPNNIKELAEYVKKNADKISLANAGIGAASHLCGTXLVEALGVNLLTIPYKGTAPAXNDLLGKQVDLXCDQTT
Template Known Secondary structure  TT
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SGGG
S
TTST



SSTTSS
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   103......110.........120.........130.........140.........150.........160.........170.........180..
 
   201........210.........220...... ...230.... .....240.........250.....
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Query Sequence  QLYALRIKLSNPAEWIVLPEVISKEP. . . . . . . . . . . . . . . . . . LGPVVRRG. DDEWFSIVRWTLFAMLNAEEM
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Template Sequence  NTTQQITSGKVKAYAVTSLKRVPTLPDLPTXDESGYKGFEVGIWHGXWAPKGTPKPVVDKLVKSLQAGLADPKF
Template Known Secondary structure  TS
SSS

TTSTTS
BTTTTT
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   183......190.........200.........210.........220.........230.........240.........250......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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