Job Description P45766 Confidence 85.69% Date Thu Jan 5 12:03:41 GMT 2012 Rank 134 Aligned Residues 161 % Identity 14% Template c1ce2A_ PDB info PDB header:metal transport Chain: A: PDB Molecule:protein (lactoferrin); PDBTitle: structure of diferric buffalo lactoferrin at 2.5a resolution Resolution 2.50 Å

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		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.																	.
Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		C	R	G	V	A	A	A	V	F	G	D	D	T	K	V	K	Y	T	P	L	T	A	K	E	R	F	T	A	L	Q	S	G	E	V	D	L	L	S	R	N	T	T	W	T	S	S	R	D	A	G	M	G	M	A	F	T	G	V	T	Y	Y	D	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I
Query Conservation																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.
Template Sequence		C	Q	Q	W	S	Q	Q	S	G	.	.	Q	I	V	T	C	A	T	A	S	T	T	D	D	C	I	A	L	V	L	K	G	E	A	D	A	L	S	L	D	G	G	Y	I	Y	T	A	G	K	C	G	L	V	P	V	L	A	E	N	R	K	S	S	K	H	S	S	L	D	C	V	L	R	P	T	E	G	Y	L	A
Template Known Secondary structure										T	.	.	S	S							S	S										T	T	S																T	T	T												S	T	T	T	T	S		T	T	T	S
Template Predicted Secondary structure											.	.
Template SS confidence
		358	.	360	.	.	.	.	.	.			.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.		.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure																									.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	F	L	T	H	D	K	A	G	L	K	S	A	K	E	L	D	G	A	T	V	C	I	.	Q	A	G	T	D	T	E	L	N	V	A	D	Y	F	K	A	N	N	M	K	Y	T	P	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																									.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	A	V	V	K	K	A	N	E	G	L	T	W	N	S	L	K	G	K	K	S	C	H	T	A	V	D	R	T	A	G	W	N	I	P	M	G	L	I	A	N	Q	T	G	S	C	A	F	D	E	F	F	S	Q	S	C	A	P	G	A	D	P	K	S	R	L	C	A	L	C	A	G	D	D	Q	G	L	D	K	C
Template Known Secondary structure							T	T	S	T	T			G	G	G		T	T						S		T	T		T	T	T	T														S		S	T	T	T	S	S					T	T	S		T	T	S	T	T	S	T	T				S	T	T	S		S	T	T
Template Predicted Secondary structure
Template SS confidence
		436	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.
								176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210									.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.																																				.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.																																				.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	T	F	D	R	S	D	E	S	A	K	A	L	E	S	G	R	C	D	T	L	A	S	D	Q	S	Q	L	Y	A	L	R	I	K	L	S	.	.	.	.	.	.	.	.	N	P	A	E	W	I	V	L	P	E	V	I	S	K	E	P	L
Query Conservation		.	.	.	.	.	.																																				.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																																				.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	P	N	S	K	E	K	Y	Y	G	Y	T	G	A	F	R	C	L	A	E	D	V	G	D	V	A	F	V	K	N	D	T	V	W	E	N	T	N	G	E	S	T	A	D	W	A	K	N	L	N	R	E	D	F	R	L	L	C	L	D	G	T	R	K	P	V
Template Known Secondary structure			S	S	T	T	S	T	T												T	T	S	S	S												T	S	S	S	S	S		S					T			T	T	S						T	T	S					T
Template Predicted Secondary structure
Template SS confidence
		516	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions