Job Description P39835 Confidence 1.98% Date Thu Jan 5 12:01:03 GMT 2012 Rank 29 Aligned Residues 162 % Identity 9% Template c2xutC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:proton/peptide symporter family protein; PDBTitle: crystal structure of a proton dependent oligopeptide (pot)2 family transporter. Resolution 3.62 Å

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		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.		.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	G	A	M	L	G	K	M	L	A	D	C	G	G	A	Q	R	I	A	T	T	L	I	A	K	F	.	G	K	K	H	I	Q	W	A	V	V	L	T	G	F	T	V	G	F	A	L	F	Y	E	V	G	F	V	L	M	L	P	L	V	F	T	I	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																												.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	K	D	V	F	H	S	F	V	I	G	V	Y	F	F	P	L	L	G	G	W	I	A	D	R	F	F	G	K	Y	N	T	I	L	W	L	S	L	I	Y	C	V	G	H	A	F	L	A	I	F	E	H	S	V	Q	G	F	Y	T	G	L	F	L	I	A	L	G	S	G	G	I	K	P	L	V	S	S	F	M	G
Template Known Secondary structure																T									T	T	S	S		S																					T	S	S																		T	T
Template Predicted Secondary structure
Template SS confidence
		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	A	N	I	P	L	L	Y	V	G	V	P	M	A	A	A	L	S	V	T	H	G	F	L	P	P	H	P	G	P	T	A	I	A	T	I	F	N	A	D	M	G	K	T	L	L	Y	G	T	I	L	A	I	P	T	V	I	L	A	G	P	V	Y	A	R	V	L	K	G	I	D	K	P	I	P	E	G	L	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	Q	F	D	Q	S	N	K	S	L	A	Q	K	A	F	D	M	F	Y	F	T	I	N	F	G	S	F	F	A	S	L	S	M	P	L	L	L	K	N	F	G	A	A	V	A	F	G	I	P	G	V	L	M	F	V	A	T	V	F	F	W	L	G	R	K	R	Y	I	H	M	P	V	E	G	K	G	N	I	G	L
Template Known Secondary structure			T		S	T	T	T	T	T																							T	S	T					T	S																						S	S	S	S	S							T	T
Template Predicted Secondary structure
Template SS confidence
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	K	T	F	S	E	E	E	M	P	S	F	G	V	S	V	W	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	L	A	L	I	G	G	V	S	A	A	Y	A	L	V	N	I	P	T
Template Known Secondary structure														T	G	G	G	T	T	T
Template Predicted Secondary structure
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions