Job Description P39835 Confidence 1.27% Date Thu Jan 5 12:01:03 GMT 2012 Rank 53 Aligned Residues 186 % Identity 10% Template c2w8aC_ PDB info PDB header:membrane protein Chain: C: PDB Molecule:glycine betaine transporter betp; PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate Resolution 3.35 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80						.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure																																																								.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.
Query Sequence		A	L	V	L	V	A	L	A	V	G	L	M	Q	G	M	P	L	D	K	V	I	G	S	I	K	A	G	V	G	G	T	L	G	S	L	A	L	I	M	G	F	G	A	M	L	G	K	M	L	A	D	C	G	G	.	.	.	.	.	A	Q	R	I	A	T	T	L	I	A	K	F	G	K	K	H	I	Q	W	A	V
Query Conservation																																																								.	.	.	.	.
Alig confidence																												.																												.	.	.	.	.
Template Conservation																												.
Template Sequence		S	P	F	V	G	X	F	L	A	R	I	S	R	G	R	S	I	R	E	F	I	L	G	V	L	L	.	V	P	A	G	V	S	T	V	W	F	S	I	F	G	G	T	A	I	V	F	E	Q	N	G	E	S	I	W	G	D	G	A	A	E	E	Q	L	F	G	L	L	H	A	L	P	G	G	Q	I	X	G	I	I
Template Known Secondary structure													T	T	T													.																								T						T	T		S										T	S	T	T
Template Predicted Secondary structure																												.
Template SS confidence
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.		.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	T	G	F	T	V	G	F	A	L	F	Y	E	V	G	F	V	L	M	L	P	L	V	F	T	I	A	A	S	A	N	I	P	L	L	Y	V	G	V	P	M	A	A	A	L	S	V	T	H	G	F	L	P	P	H	P	G	P	T	A	I	A	T	I	F	N	A	D	M	G	K	T	L	L	Y	G	T	I	L
Query Conservation
Alig confidence																												.	.	.	.	.																			.	.	.	.	.	.
Template Conservation																												.	.	.	.	.																			.	.	.	.	.	.
Template Sequence		A	X	I	L	L	G	T	F	F	I	T	S	A	D	S	A	S	T	V	X	G	T	X	S	Q	H	.	.	.	.	.	G	Q	L	E	A	N	K	W	V	T	A	A	W	G	V	A	T	A	.	.	.	.	.	.	A	I	G	L	T	L	L	L	S	G	G	D	N	A	L	S	N	L	Q	N	V	T	I	V	A
Template Known Secondary structure																									T	T	T	.	.	.	.	.	T		S	S															.	.	.	.	.	.											G	G	G
Template Predicted Secondary structure																												.	.	.	.	.																			.	.	.	.	.	.
Template SS confidence
		457	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.						.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500							.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	P	T	V	I	L	A	G	P	V	Y	A	R	V	L	K	G	I	D	K	P	I	P	E	G	L	Y	S	A	K	T	F	S	E	E	E	M	P	S	F	G	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	T	P	F	L	F	V	V	I	G	L	X	F	A	L	V	K	D	L	S	N	D	V	I	Y	L	E	Y	R	E	Q	Q	R	F	N	A	R	L	A	R	E	R	R
Template Known Secondary structure																						T
Template Predicted Secondary structure
Template SS confidence
		526	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions