Job Description P0A6Q3 Confidence 45.42% Date Thu Jan 5 11:03:41 GMT 2012 Rank 102 Aligned Residues 101 % Identity 7% Template c3bnvD_ PDB info PDB header:unknown function Chain: D: PDB Molecule:cj0977; PDBTitle: crystal structure of cj0977, a sigma28-regulated virulence protein2 from campylobacter jejuni. Resolution 2.60 Å

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		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	V	V	K	M	T	E	T	G	G	N	F	D	K	G	Y	V	E	A	E	L	D	I	N	P	D	L	W	F	F	G	C	H	F	I	G	D	P	V	M	P	G	C	L	G	L	D	A	M	W	Q	L	V	G	F	Y	L	G	W	L	G	G	E	G	K	G	R	A	L	G	V	G	E	V	K	F	T	G	Q	V
Query Conservation
Alig confidence										.	.	.	.	.	.	.											.	.	.	.	.																												.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.											.	.	.	.	.																												.	.	.	.	.
Template Sequence		T	I	I	E	I	D	K	N	.	.	.	.	.	.	.	Y	A	K	S	I	L	I	T	T	S	.	.	.	.	.	E	X	V	A	D	D	Q	G	L	I	F	D	A	F	I	F	A	A	A	N	Y	V	A	Q	A	S	I	.	.	.	.	.	N	K	E	F	S	V	I	I	G	S	K	C	F	F	Y	A	P	L
Template Known Secondary structure								T	T	.	.	.	.	.	.	.										G	.	.	.	.	.	G	G	B	S	S	T	T		B	B		T																.	.	.	.	.			S	S												S
Template Predicted Secondary structure										.	.	.	.	.	.	.											.	.	.	.	.																												.	.	.	.	.
Template SS confidence
		42	.	.	.	.	.	.	.								50	.	.	.	.	.	.	.	.	.						60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.						.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	T	A	K	K	V	T	Y	R	I	H	F	K	R	I	V	N	R	R	L	I	M	G	L	A	D	G	E	V	L	V	D	G	R	L	I	Y	T	A	S
Query Conservation
Alig confidence						.																.	.
Template Conservation						.																.	.
Template Sequence		K	L	G	D	.	V	L	E	L	E	A	H	A	L	F	D	E	T	S	K	.	.	K	R	D	V	K	V	V	G	H	V	K	E	I	K	X	F	E	G	T
Template Known Secondary structure		B	T	T		.												S	S		S	.	.											T	T
Template Predicted Secondary structure						.																.	.
Template SS confidence
		105	.	.	.		.	110	.	.	.	.	.	.	.	.	.	120	.	.	.			.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions