Return to main results Retrieve Phyre Job Id

Job DescriptionP71298
Confidence98.96%DateThu Jan 5 12:12:44 GMT 2012
Rank21Aligned Residues92
% Identity15%Templatec2oxoA_
PDB info PDB header:dna binding proteinChain: A: PDB Molecule:integrase; PDBTitle: crystallization and structure determination of the core-2 binding domain of bacteriophage lambda integrase
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   137..140.........150.........160.........170.........180.........190.........200.........210......
Predicted Secondary structure 



















Query SS confidence 















































































Query Sequence  VTFSVAWEDYLQELRTGISAKTKRPYSTRYIADHINLSSRGGESKKRGQGPTSAGPLASLLNLPLSELTPDYIAAWLSTE
Query Conservation   
  
    

                                                
    
  

   
       
Alig confidence 

































......................























Template Conservation 

       
            
   
      
......................    
   
  

   
       
Template Sequence  MTLHSWLDRYEKILASRGIKQKTLINYMSKIKAI. . . . . . . . . . . . . . . . . . . . . . RRGLPDAPLEDITTKEIAAMLNGY
Template Known Secondary structure 
B


......................S
S
BGGG

Template Predicted Secondary structure 





......................

Template SS confidence 















































































   74.....80.........90.........100....... ..110.........120.........130.
 
   217.. 220.........230.........240.........250
Predicted Secondary structure 

.






Query SS confidence 


.






























Query Sequence  RQN. RPTVTAHAYRLLRAFIKWSNYQKKYQGIIPG
Query Conservation     .    
      
      
            
Alig confidence 


.






























Template Conservation         
       
   
  

  
 
  

 
Template Sequence  IDEGKAASAKLIRSTLSDAFREAIAEGHITTNHVA
Template Known Secondary structure  TT
TTS
SS
TT
Template Predicted Secondary structure 









Template SS confidence 


































   132.......140.........150.........160......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions