Job Description P71298 Confidence 98.94% Date Thu Jan 5 12:12:44 GMT 2012 Rank 22 Aligned Residues 103 % Identity 7% Template c2khqA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:integrase; PDBTitle: solution nmr structure of a phage integrase ssp19472 fragment 59-159 from staphylococcus saprophyticus,3 northeast structural genomics consortium target syr103b Resolution UNK

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	F	S	V	A	W	E	D	Y	L	Q	E	L	R	T	G	I	S	A	K	T	K	R	P	Y	S	T	R	Y	I	A	D	H	I	N	L	S	S	R	G	G	E	S	K	K	R	G	Q	G	P	T	S	A	G	P	L	A	S	L	L	N	L	P	L	S	E	L	T	P	D	Y	I	A	A	W	L	S	T	E
Query Conservation
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	T	F	A	D	Y	F	Y	Q	W	Y	E	V	N	K	L	P	H	V	S	E	S	T	K	R	H	Y	E	S	A	Y	K	H	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	D	H	F	R	H	K	L	L	K	D	I	K	R	T	E	Y	Q	K	F	L	N	E	Y
Template Known Secondary structure			B													T	G	G	G	S																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S	S		B	G	G	G
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.																							.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.
		217	.	.		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure					.
Query SS confidence					.
Query Sequence		R	Q	N	.	R	P	T	V	T	A	H	A	Y	R	L	L	R	A	F	I	K	W	S	N	Y	Q	K	K	Y	Q	G	I	I	P	G	D	L	A	Q	D	Y	N	V	R	K	M
Query Conservation					.
Alig confidence					.
Template Conservation
Template Sequence		G	L	T	H	S	Y	E	T	I	R	K	L	N	S	Y	I	R	N	A	F	D	D	A	I	H	E	G	Y	V	I	K	N	P	T	Y	K	A	E	L	H	A	S	V	L	E	H
Template Known Secondary structure					S																						T	T						G	G	G	G						G	G	G
Template Predicted Secondary structure
Template SS confidence
		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions