Job Description P71298 Confidence 89.56% Date Thu Jan 5 12:12:44 GMT 2012 Rank 32 Aligned Residues 127 % Identity 15% Template c2h7fX_ PDB info PDB header:isomerase/dna Chain: X: PDB Molecule:dna topoisomerase 1; PDBTitle: structure of variola topoisomerase covalently bound to dna Resolution 2.70 Å

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		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.												310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.			.	330	.	.	.	.	.	.	.	.	.			340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.																				.	.												.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.																				.	.												.	.
Query Sequence		I	A	S	A	Y	L	Q	V	L	L	L	T	G	A	R	R	E	E	.	.	.	.	.	.	.	.	.	.	.	I	A	S	L	R	W	S	D	V	D	F	K	W	S	S	M	R	I	K	.	.	D	K	I	E	G	E	R	I	I	P	L	.	.	T	P	Y	V	S	E	L	L	N	V	L	A	Q	S	P	N	S
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.																				.	.												.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.																				.	.												.	.												.	.	.	.
Template Conservation																																																																												.	.	.	.
Template Sequence		Q	L	A	V	F	M	L	M	E	T	M	F	F	I	R	F	G	K	M	K	Y	L	K	E	N	E	T	V	G	L	L	T	L	K	N	K	H	I	E	I	S	P	D	K	I	V	I	K	F	V	G	K	D	K	V	S	H	E	F	V	V	H	K	S	N	R	L	Y	K	P	L	L	K	L	.	.	.	.	T	D
Template Known Secondary structure																															S	T	T		B	G	G	G					S	S									G	G	G									T	T	S	T	T								.	.	.	.
Template Predicted Secondary structure																																																																												.	.	.	.
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.					190	.
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.																				.	.	.	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	V	N	K	E	G	W	V	F	R	S	N	S	K	S	G	K	I	I	E	P	R	S	A	H	N	R	A	L	V	L	A	E	L	P	H	I	S	L	H	G	L	R	R	S	F	G	T	L	A	E	W	V	E	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	T	G	I	V	A
Query Conservation																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.																.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.																.	.	.	.	.	.	.
Template Sequence		D	S	S	P	E	E	F	L	F	.	.	.	.	N	K	L	S	E	R	K	V	Y	E	S	I	K	Q	F	.	.	.	.	.	.	.	G	I	R	I	K	D	L	R	T	Y	G	V	N	Y	T	F	L	Y	N	F	W	T	N	V	K	S	I	S	P	L	P	S	P	K	K	L	I	A	L	T	I	K	Q	T	A
Template Known Secondary structure		T	T		T	T	S	B	T	T	.	.	.	.	T	T											G	G	G	.	.	.	.	.	.	.	T																										S	S	S
Template Predicted Secondary structure											.	.	.	.																.	.	.	.	.	.	.
Template SS confidence
		192	.	.	.	.	.	.	.	200					.	.	.	.	.	.	.	.	.	210	.	.	.	.	.								.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
		418	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	I	M	G	H	K	P	S	A	L	A	E	K	H	Y	R	R
Query Conservation
Alig confidence								.
Template Conservation								.
Template Sequence		E	V	V	G	H	T	.	P	S	I	S	K	R	A	M	A	T
Template Known Secondary structure					T	S		.
Template Predicted Secondary structure								.
Template SS confidence
		261	.	.	.	.	.		.	.	.	270	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions