Job Description P71298 Confidence 99.89% Date Thu Jan 5 12:12:44 GMT 2012 Rank 8 Aligned Residues 254 % Identity 19% Template c2a3vA_ PDB info PDB header:recombination Chain: A: PDB Molecule:site-specific recombinase inti4; PDBTitle: structural basis for broad dna-specificity in integron2 recombination Resolution 2.80 Å

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		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	A	W	E	D	Y	L	Q	E	L	R	T	G	I	S	A	K	T	K	R	P	Y	S	T	R	Y	I	A	D	H	I	N	L	S	S	R	G	G	E	S	K	K	R	G	Q	G	P	T	S	A	G	P	L	A	S	L	L	N	L	P	L	S	E	L	T	P	D	Y	I	A	A	W	L	S	T	E	R	Q	N
Query Conservation
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	Q	F	L	L	S	V	R	E	F	M	Q	T	R	Y	Y	A	K	K	T	I	E	A	Y	L	H	W	I	T	R	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	H	F	H	N	K	K	H	P	S	L	M	G	D	K	E	V	E	E	F	L	T	Y	L	A	V	Q
Template Known Secondary structure															T	T																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	S	S	S			G	G	G															T	T
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.																							.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
					220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	R	P	T	V	T	A	H	A	Y	R	L	L	R	A	F	I	K	W	S	N	Y	Q	K	K	Y	Q	G	I	I	P	G	D	L	A	Q	D	Y	N	V	R	K	M	V	P	V	S	A	S	K	A	D	D	C	L	Q	K	E	Q	L	K	S	W	F	S	A	V	R	S	L	N	N	P	I	A	S	A	Y
Query Conservation		.	.	.
Alig confidence		.	.	.																																.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.
Template Sequence		G	K	V	A	T	K	T	Q	S	L	A	L	N	S	L	S	F	L	Y	K	E	I	L	K	T	P	L	S	L	E	I	R	F	Q	.	.	.	.	.	.	.	.	.	.	.	R	S	Q	L	E	R	K	L	P	V	V	L	T	R	D	E	I	R	R	L	L	.	.	.	.	E	I	V	D	P	K	H	Q	L	P
Template Known Secondary structure		T																					T	S	S					T	T					.	.	.	.	.	.	.	.	.	.	.																					T	.	.	.	.	T	S	S
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.
Template SS confidence
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.												.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.					.	.	.	.	120	.	.	.	.	.
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.																																			.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	Q	V	L	L	L	T	G	A	R	R	E	E	I	A	S	L	R	W	S	D	V	D	F	K	W	S	S	M	R	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	D	K	I	E	G	E	R	I	I	P	L	T	P	Y
Query Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	K	L	L	Y	G	S	G	L	R	L	M	E	C	M	R	L	R	V	Q	D	I	D	F	D	Y	G	A	I	R	I	W	Q	G	K	G	G	K	N	R	T	V	T	L	A	K	E	L	Y	P	H	L	K	E	Q	I	A	L	A	K	R	Y	Y	D	R	D	L	H	Q	K	N	Y	G	G	V	W	L	P	T	A
Template Known Secondary structure								S									T		B	G	G	G			T	T	T	T								T	T	T									G	G	G																			T	S		T	T	B			S			S	T	T
Template Predicted Secondary structure
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.													.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.		.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.																					.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.	.																					.
Query Sequence		V	S	E	L	L	N	V	L	A	Q	S	P	N	S	D	V	N	K	E	G	W	V	F	R	S	N	S	K	S	.	.	.	.	.	.	.	.	.	.	.	.	G	K	I	I	E	P	R	S	A	H	N	R	A	L	V	L	A	E	L	P	.	H	I	S	L	H	G	L	R	R	S	F	G	T	L	A	E	W	V
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.	.																					.
Alig confidence									.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.																					.
Template Conservation									.	.	.	.	.
Template Sequence		L	K	E	K	Y	P	N	.	.	.	.	.	A	P	Y	E	F	R	W	H	Y	L	F	P	S	F	Q	L	S	L	D	P	E	S	D	V	M	R	R	H	H	M	N	E	T	V	L	Q	K	A	V	R	R	S	A	Q	E	A	G	I	E	K	T	V	T	C	H	T	L	R	H	S	F	A	T	H	L	L	E	V
Template Known Secondary structure			T	T	T	S	T	T	.	.	.	.	.	G	G	G		G	G	G	S	B	S	S	B		S	S					T	T	T	T						B																T	T				S																		T
Template Predicted Secondary structure									.	.	.	.	.
Template SS confidence
		206	.	.	.	210	.	.						.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	V	P	T	G	I	V	A	Q	I	M	G	H	K	P	S	A	L	A	E	K	H	Y	R	R	R	P
Query Conservation
Alig confidence																						.
Template Conservation																						.
Template Sequence		G	A	D	I	R	T	V	Q	E	Q	L	G	H	T	D	V	K	T	T	Q	.	I	Y	T	H	S	G
Template Known Secondary structure		T											T		S	S					G	.	G	G
Template Predicted Secondary structure																						.
Template SS confidence
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300		.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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