Job Description P71298 Confidence 100.00% Date Thu Jan 5 12:12:44 GMT 2012 Rank 1 Aligned Residues 326 % Identity 14% Template c1z1bA_ PDB info PDB header:dna binding protein/dna Chain: A: PDB Molecule:integrase; PDBTitle: crystal structure of a lambda integrase dimer bound to a2 coc' core site Resolution 3.80 Å

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		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	T	L	A	C	R	A	T	S	G	A	K	A	F	V	F	Q	S	V	Y	A	G	K	T	L	R	M	T	I	G	N	I	N	D	W	K	I	D	D	A	R	A	E	A	R	R	L	Q	T	L	I	D	T	G	I	D	P	R	I	A	K	A	V	K	I	A	E	A	E	S	L	Q	A	E	S	R	K	T	K	V
Query Conservation
Alig confidence								.	.	.															.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.															.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	N	L	Y	I	R	.	.	.	N	N	G	Y	Y	C	Y	R	D	P	R	T	G	K	.	.	E	F	G	L	G	R	D	R	R	I	A	I	T	E	A	I	Q	A	N	I	E	L	F	S	G	H	K	H	K	P	L	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	R	I	N	S	D	N	S	V
Template Known Secondary structure		T	T					.	.	.	T	T	T							T	T	T			.	.						S																											.	.	.	.	.	.	.	.	.	.	.	.	.	.								S
Template Predicted Secondary structure								.	.	.															.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		14	.	.	.	.	.				20	.	.	.	.	.	.	.	.	.	30	.	.	.			.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.															.	.	.	.	70	.	.	.	.
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	F	S	V	A	W	E	D	Y	L	Q	E	L	R	T	G	I	S	A	K	T	K	R	P	Y	S	T	R	Y	I	A	D	H	I	N	L	S	S	R	G	G	E	S	K	K	R	G	Q	G	P	T	S	A	G	P	L	A	S	L	L	N	L	P	L	S	E	L	T	P	D	Y	I	A	A	W	L	S	T	E	R
Query Conservation
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	L	H	S	W	L	D	R	Y	E	K	I	L	A	S	R	G	I	K	Q	K	T	L	I	N	Y	M	S	K	I	K	A	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	R	G	L	P	D	A	P	L	E	D	I	T	T	K	E	I	A	A	M	L	N	G	Y	I
Template Known Secondary structure		B														T	T	T																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				S		S		B	G	G	G
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.																							.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
		218		.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure			.
Query SS confidence			.
Query Sequence		Q	.	N	R	P	T	V	T	A	H	A	Y	R	L	L	R	A	F	I	K	W	S	N	Y	Q	K	K	Y	Q	G	I	I	P	G	D	L	A	Q	D	Y	N	V	R	K	M	V	P	V	S	A	S	K	A	D	D	C	L	Q	K	E	Q	L	K	S	W	F	S	A	V	R	S	L	N	N	P	I	A	S	A	Y
Query Conservation			.
Alig confidence			.																																			.	.	.	.	.	.	.	.	.	.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.
Template Sequence		D	E	G	K	A	A	S	A	K	L	I	R	S	T	L	S	D	A	F	R	E	A	I	A	E	G	H	I	T	T	N	H	V	A	A	T	.	.	.	.	.	.	.	.	.	.	R	A	A	K	S	K	V	R	R	S	R	L	T	A	D	E	Y	L	K	I	Y	Q	A	A	E	S	S	P	C	W	L	R	L	A
Template Known Secondary structure			T	T																						T	T	S		S	S		T	T	T	T	S	.	.	.	.	.	.	.	.	.	.									B															T	T	S	S
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.
Template SS confidence
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.											.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.			.	.	.	360	.	.	.	.	.	.	.		.	.	370	.	.	.
Predicted Secondary structure																																																														.	.												.
Query SS confidence																																																														.	.												.
Query Sequence		L	Q	V	L	L	L	T	G	A	R	R	E	E	I	A	S	L	R	W	S	D	V	D	F	K	W	S	S	M	R	I	K	D	K	I	E	G	E	R	I	I	P	L	T	P	Y	V	S	E	L	L	N	V	L	A	Q	S	P	N	S	.	.	D	V	N	K	E	G	W	V	F	R	S	.	N	S	K	S	G	K
Query Conservation																																																														.	.												.
Alig confidence																																							.																							.	.												.
Template Conservation																																							.
Template Sequence		M	E	L	A	V	V	T	G	Q	R	V	G	D	L	C	E	M	K	W	S	D	I	V	D	G	Y	L	Y	V	E	Q	S	K	T	G	V	K	.	I	A	I	P	T	A	L	H	I	D	A	L	G	I	S	M	K	E	T	L	D	K	C	K	E	I	L	G	G	E	T	I	I	A	S	T	R	R	E	P	L	S
Template Known Secondary structure																T	T		B	G	G	G			T	T							T	T	T				.					T	T				T	T	T	T														T		S	S	B	S	S			T	T	S
Template Predicted Secondary structure																																							.
Template SS confidence
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
		374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.					.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.
Query SS confidence																				.	.	.	.
Query Sequence		I	I	E	P	R	S	A	H	N	R	A	L	V	L	A	E	L	P	.	.	.	.	H	I	S	L	H	G	L	R	R	S	F	G	T	L	A	E	W	V	E	V	P	T	G	I	V	A	Q	I	M	G	H	K	P	S	A	L	A	E	K	H	Y	R	R	R	P
Query Conservation																				.	.	.	.
Alig confidence																				.	.	.	.										.
Template Conservation																																	.
Template Sequence		S	G	T	V	S	R	Y	F	M	R	A	R	K	A	S	G	L	S	F	E	G	D	P	P	T	F	H	E	L	R	S	.	L	S	A	R	L	Y	E	K	Q	I	S	D	K	F	A	Q	H	L	L	G	H	K	S	D	T	M	A	S	Q	R	D	D	R	G	R
Template Known Secondary structure																	T				S	S	B				T	T					.										T										T		S	S					T					T	T	S
Template Predicted Secondary structure																																	.
Template SS confidence
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.		.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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