Job Description P71298 Confidence 11.24% Date Thu Jan 5 12:12:44 GMT 2012 Rank 51 Aligned Residues 104 % Identity 16% Template c1nh3A_ PDB info PDB header:isomerase/dna Chain: A: PDB Molecule:dna topoisomerase i; PDBTitle: human topoisomerase i ara-c complex Resolution 3.10 Å

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		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.													.	310	.	.	.	.	.	.	.	.	.	320	.	.									.	.	.	.	.	.	.	330	.	.	.			.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.												.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.												.	.
Query Sequence		I	A	S	A	Y	L	Q	V	L	L	L	T	G	A	R	R	E	.	.	.	.	.	.	.	.	.	.	.	.	E	I	A	S	L	R	W	S	D	V	D	F	K	W	.	.	.	.	.	.	.	.	S	S	M	R	I	K	D	K	I	E	G	.	.	E	R	I	I	P	L	T	P	Y	V	S	E	L	L	N	V
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.												.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.												.	.
Template Conservation
Template Sequence		Q	R	A	V	A	L	Y	F	I	D	K	L	A	L	R	A	G	N	E	K	E	E	G	E	T	A	D	T	V	G	C	C	S	L	R	V	E	H	I	N	L	H	P	E	L	D	G	Q	E	Y	V	V	E	F	D	F	L	G	K	D	S	I	R	Y	Y	N	K	V	P	V	E	K	R	V	F	K	N	L	Q	L
Template Known Secondary structure													T										B	T	T	B						S	T	T		B	G	G	G								T	T												.
Template Predicted Secondary structure
Template SS confidence
		474	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	Q	S	P	N	S	D	V	N	K	E	G	W	V	F	R	S	N	S	K	S	G	K	I	I	E	P	R	S	A	H	N	R	A	L	V	L	A	E	L	P	H	I	S	L	H	G	L	R	R	S	F	G	T	L	A	E	W
Query Conservation
Alig confidence			.	.	.	.												.	.	.	.	.	.	.																	.	.
Template Conservation			.	.	.	.												.	.	.	.	.	.	.																	.	.
Template Sequence		F	.	.	.	.	M	E	N	K	Q	P	E	D	D	L	F	.	.	.	.	.	.	.	D	R	L	N	T	G	I	L	N	K	H	L	Q	D	L	M	.	.	E	G	L	T	A	K	V	F	R	T	Y	N	A	S	I	T	L	Q
Template Known Secondary structure			.	.	.	.		S	S			T	T	S	B	S	S	.	.	.	.	.	.	.	T	T														S	.	.	S	S			T	T
Template Predicted Secondary structure			.	.	.	.												.	.	.	.	.	.	.																	.	.
Template SS confidence
		554					.	.	.	.	.	560	.	.	.	.	.								.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.			.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions