Job Description P71298 Confidence 99.96% Date Thu Jan 5 12:12:44 GMT 2012 Rank 3 Aligned Residues 290 % Identity 13% Template c1ma7A_ PDB info PDB header:hydrolase, ligase/dna Chain: A: PDB Molecule:cre recombinase; PDBTitle: crystal structure of cre site-specific recombinase2 complexed with a mutant dna substrate, loxp-a8/t27 Resolution 2.30 Å

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		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.			.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure																		.	.
Query SS confidence																		.	.
Query Sequence		T	F	S	V	A	W	E	D	Y	L	Q	E	L	R	T	G	.	.	I	S	A	K	T	K	R	P	Y	S	T	R	Y	I	A	D	H	I	N	L	S	S	R	G	G	E	S	K	K	R	G	Q	G	P	T	S	A	G	P	L	A	S	L	L	N	L	P	L	S	E	L	T	P	D	Y	I	A	A	W	L	S	T
Query Conservation																		.	.
Alig confidence																		.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	S	D	E	V	R	K	N	L	M	D	M	F	R	D	R	Q	A	F	S	E	H	T	W	K	M	L	L	S	V	C	R	S	W	A	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	C	K	L	N	N	R	K	W	F	P	A	E	P	E	D	V	R	D	Y	L	L	Y
Template Known Secondary structure																T	G	G	G	S																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T				S	S
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.																						.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		216	.	.	.			220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.				290
Predicted Secondary structure						.	.																																																																							.	.	.
Query SS confidence						.	.																																																																							.	.	.
Query Sequence		E	R	Q	N	.	.	R	P	T	V	T	A	H	A	Y	R	L	L	R	A	F	I	K	W	S	N	Y	Q	K	K	Y	Q	G	I	I	P	G	D	L	A	Q	D	Y	N	V	R	K	M	V	P	V	S	A	S	K	A	D	D	C	L	Q	K	E	Q	L	K	S	W	F	S	A	V	R	S	L	N	.	.	.	N
Query Conservation						.	.																																																																							.	.	.
Alig confidence						.	.																																																																							.	.	.
Template Conservation
Template Sequence		L	Q	A	R	G	L	A	V	K	T	I	Q	Q	H	L	G	Q	L	N	M	L	H	R	R	S	G	L	P	R	P	S	D	S	N	A	V	S	L	V	M	R	R	I	R	K	E	N	V	D	A	G	E	R	A	K	Q	A	L	A	F	E	R	T	D	F	D	Q	V	R	S	L	M	E	N	S	D	R	C	Q	D
Template Known Secondary structure				T	T	T																			T	T	T	S			G	G	G	S																T	T	T																						T	T
Template Predicted Secondary structure
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.								.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.
Query Sequence		P	I	A	S	A	Y	L	Q	V	L	L	L	T	G	A	R	R	E	E	I	A	S	L	R	W	S	D	V	D	F	K	W	S	S	M	R	I	K	.	.	.	.	.	.	.	D	K	I	E	G	E	R	I	I	P	L	T	P	Y	V	S	E	L	L	N	V	L	A	Q	S	P	N	S	D	V	N	K	E	G	W
Query Conservation																																								.	.	.	.	.	.	.
Alig confidence																																								.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	R	N	L	A	F	L	G	I	A	Y	N	T	L	L	R	I	A	E	I	A	R	I	R	V	K	D	I	S	R	T	D	G	G	R	M	L	I	H	I	G	R	T	K	T	L	V	S	T	A	G	V	E	K	A	L	S	L	G	V	T	K	L	V	E	R	W	I	S	V	S	G	V	A	D	D	P	N	N	Y
Template Known Secondary structure																		S					S		B	S	S	S			S	T	T	T	T	S										S	S	S	S		S								T	T															S	S	S	T	T	S	B
Template Predicted Secondary structure
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		364	.	.	.	.	.	370	.	.											.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390										.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.
Query Sequence		V	F	R	S	N	S	K	S	G	.	.	.	.	.	.	.	.	.	.	K	I	I	E	P	R	S	A	H	N	R	A	L	V	L	A	E	L	.	.	.	.	.	.	.	.	.	P	H	I	S	L	H	G	L	R	R	S	F	G	T	L	A	E	W	V	E	V	P	T	G	I	V	A	Q	I	M	G	H	K	P
Query Conservation											.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	F	C	R	V	R	K	N	G	V	A	A	P	S	A	T	S	Q	L	S	T	R	A	L	E	G	I	F	E	A	T	H	R	L	I	Y	G	A	K	D	D	S	G	Q	R	Y	L	A	W	S	G	H	S	A	R	V	G	A	A	R	D	M	A	R	A	G	V	S	I	P	E	I	M	Q	A	G	G	W	T	N
Template Known Secondary structure		S				B		T	T	S		B				S	S																				T		S				S	S		S		S	S			T	T													T	T											T		S
Template Predicted Secondary structure
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		425	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	L	A	E	K	H	Y	R	R	R	P	L	D	L	L	R	K	W	H	E	K	I	E	T
Query Conservation
Alig confidence								.
Template Conservation								.
Template Sequence		V	N	I	V	M	N	.	Y	I	R	N	L	D	S	E	T	G	A	M	V	R	L	L	E	D
Template Known Secondary structure		S						.			T	T		G	G	G									T
Template Predicted Secondary structure								.
Template SS confidence
		318	.	320	.	.	.		.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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