Job Description P77698 Confidence 48.80% Date Thu Jan 5 12:31:47 GMT 2012 Rank 50 Aligned Residues 68 % Identity 21% Template c6paxA_ PDB info PDB header:gene regulation/dna Chain: A: PDB Molecule:homeobox protein pax-6; PDBTitle: crystal structure of the human pax-6 paired domain-dna2 complex reveals a general model for pax protein-dna3 interactions Resolution 2.50 Å

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		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	I	F	K	L	R	M	E	R	R	S	L	N	A	I	A	K	Y	L	N	D	H	A	V	K	N	F	S	G	K	E	S	A	W	G	P	S	V	I	E	K	L	L	A	N	K	A	L	I	G	I	C	V	P	S	Y	R	A	R	G	K	G	I	S	E	I	A	G	Y	Y	P	R	V	I	S	D	D	L	F
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.
Template Sequence		Q	R	I	V	E	L	A	H	S	G	A	R	P	C	D	I	S	R	I	L	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	V	S	N	G	C	V	S	K	I	L	G	R	Y	Y	A	T	G	S	I	R	P	R	A	I	.	.	.	.	.	.	.	.	.	G	G	S	K	P	R	V	A	T	P	E	V	V
Template Known Secondary structure										T	T											T	.	.	.	.	.	.	.	.	.	.	.	.	.																	S			S					.	.	.	.	.	.	.	.	.	S					S	S	S
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.														.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.										.	70	.	.	.	.	.	.	.	.	.	80	.
		278	.	280	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	A	V	Q	E	I	R	L	A	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	K	I	A	Q	Y	K	Q	E	C
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions